View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6828_low_15 (Length: 221)
Name: NF6828_low_15
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6828_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 15419635 - 15419425
Alignment:
| Q |
2 |
cacctgaatccaggaagagtctgttatcacatgagttatagctagcatatgaattgttgttcgattttttgacacttgacaaaggcggaattaattgttg |
101 |
Q |
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| T |
15419635 |
cacctgaatccag-aagagtctgttatcacatgagttatagctggcatatgaattgttgttcgattttttgacacttgacaaaggcggaattaattgttg |
15419537 |
T |
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| Q |
102 |
taacaggttcttaatgaaccctcattagcattggactcattattcctttgtttatctat-atagtattccaagatttctcattattctttctttctgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15419536 |
taacaggttcttaatgaaccctcattagcattggactcattattccttggtttatctatcatagtattccaagatttctcattattctttctttctgtag |
15419437 |
T |
|
| Q |
201 |
attgaatttgcg |
212 |
Q |
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|||||||||||| |
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| T |
15419436 |
attgaatttgcg |
15419425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 17682521 - 17682708
Alignment:
| Q |
21 |
tctgttatcacatgagttata--gctagcatatgaattgttgttc-----gattttttgacacttgacaaaggcggaattaattgttgtaacaggttctt |
113 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||| |||||| ||| || |||||||||||||| ||||| ||||||||||||| |
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| T |
17682521 |
tctgttatcacatgagttatatagctggcatatgaattgttgttccagtggattttcagaccctagacaaaggcggaataaattgatgtaacaggttctg |
17682620 |
T |
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| Q |
114 |
aatgaaccctcattagcattggactcattattcctttgtttatctat-atagtattccaagatttctcattattctttctttctgtagatt |
203 |
Q |
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| T |
17682621 |
aatgaaccc---ttaacattggactcattattccgtggtttatctatcgtagttttccaagatttctcatgattttttcttcctgtggatt |
17682708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 15432745 - 15432633
Alignment:
| Q |
17 |
agagtctgttatcacatgagttatagctagcatatgaattgttgttc-----gattttttgacacttgacaaaggcggaattaattgttgtaacaggttc |
111 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||||||||||||||| |||||||||||| |
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| T |
15432745 |
agagtctgttatcacatgagttatagctttcatatgaat-gttgttacagtggattttctgacccttgacaaaggcggaattaattgatgtaacaggttc |
15432647 |
T |
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| Q |
112 |
ttaatgaaccctca |
125 |
Q |
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| T |
15432646 |
tgaatgaaccctca |
15432633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 15080688 - 15080787
Alignment:
| Q |
17 |
agagtctgttatcacatgagttatagctagcatatgaattgttgttc-----gattttttgacacttgacaaaggcggaattaattgttgtaacaggttc |
111 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| ||||| |||||| |||||||||||||||||| |
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| T |
15080688 |
agagtctgttatcacatgagttatagctggcatatgaattgttgttccagtggattttctgacccttgtcaaagacggaatgaattgttgtaacaggttc |
15080787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 14662720 - 14662530
Alignment:
| Q |
17 |
agagtctgttatcacatgagttatagctagcatatgaattgttgttc-----gattttttgacacttgacaaaggcggaattaattgttgtaacaggttc |
111 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||| ||||||||||||||| ||||| || ||| |
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| T |
14662720 |
agagtctgttatcacatgagttatagctggcatatgaatt--tgttccagtggattttctgaccctt-acataggcggaattaattgatgtaaaagattc |
14662624 |
T |
|
| Q |
112 |
ttaatgaaccctcattagcattggactcattattcctttgtttatctat-atagtattccaagatttctcattattctttctttctgtagattgaat |
207 |
Q |
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| || |||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| ||| || |||| |||||||| |
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| T |
14662623 |
tgaaaaaaccct---tagcattggacaaattattcctttgtttatctatcacagtattccaagatttctcatgattttttattcctgttgattgaat |
14662530 |
T |
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