View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6828_low_3 (Length: 348)
Name: NF6828_low_3
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6828_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 38046344 - 38046012
Alignment:
| Q |
5 |
tgcagactattaaagatctcccagatgcccaggaagttgccgacaaaagtattgaagttgatggtgcaccacaacaatgaccgtatctcatgtctgtgta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38046344 |
tgcagactattaaagatctcccagatgcccaggaagttgccgacaaaagtattgaagttgatggtgcaccacaacaatgaccgtatctcatgtctgtgta |
38046245 |
T |
|
| Q |
105 |
gtgtgtaccataattcatttaatgtaaattacaattagttattatttattatgtactaaattaaatgtctgttgtaattttatgagagtgtcccaagaaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38046244 |
gtgtgtaccataattcatttaatgtaaattacatttagttattatttattatgtactaaattaaacgtctgttgtaattttatgagagtgtcccaagaaa |
38046145 |
T |
|
| Q |
205 |
tcaagtctactggatgattcagtcccttttatggccggtatttttaatttaattgatggtggatatttcattcactaagaaaaaggagatcaaacaaaat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38046144 |
tcaagtctactggatgattcagtcccttttatggccggtatttttaatttaattgatagtggatatttcattcactaagaaaaaggagatcaaacaaaat |
38046045 |
T |
|
| Q |
305 |
tacaattttgtcttaagaaatattacttgatgt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38046044 |
tacaattttgtcttaagaaatattacttgatgt |
38046012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University