View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6828_low_4 (Length: 347)
Name: NF6828_low_4
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6828_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 31114164 - 31114454
Alignment:
| Q |
1 |
tttgatttatgtaagcttgtgttacattaaacaaatttcatgcattattgaatacatacgacgctgatagaaaacaacaaaaattgagagaaaatatatc |
100 |
Q |
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| T |
31114164 |
tttgattaatgtaagcttgtgttacattaaacaaatttcatgcattattgaatacatacgacgctgatagaaaacaacaaaaattgggagaaaatatatc |
31114263 |
T |
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| Q |
101 |
gtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagttcaaacaaacaccactgacacggtggccgctgacagtagatactctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
31114264 |
gtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagttcaaacaaacgccactgacacagtggccgctgacagtagatactctca |
31114363 |
T |
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| Q |
201 |
aaaacttctcccacccaaagcttcaaacaaacaggaaacaatggttcgttaaaaaattggcgacttgttttgcaattaagggttattttat |
291 |
Q |
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| T |
31114364 |
acaacttctcccacccaaagcttcaaacaaacaggaacaaatggttcgttaaaaaattggtgacttgttttgcaagtaagagttatattat |
31114454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 31088287 - 31088340
Alignment:
| Q |
184 |
gacagtagatactctcaaaaacttctcccacccaaagcttcaaacaaacaggaa |
237 |
Q |
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| T |
31088287 |
gacagtagaaactctcgacaacttctcccaccgcaagcttcaaacaaacgggaa |
31088340 |
T |
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