View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6828_low_6 (Length: 309)

Name: NF6828_low_6
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6828_low_6
NF6828_low_6
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-306)||(50472-50777)
[»] chr3 (11 HSPs)
chr3 (2-210)||(10076299-10076505)
chr3 (134-217)||(10376658-10376741)
chr3 (134-216)||(10364611-10364693)
chr3 (246-309)||(10434708-10434771)
chr3 (246-309)||(10364462-10364525)
chr3 (233-309)||(9838190-9838266)
chr3 (233-309)||(9849068-9849144)
chr3 (1-73)||(10031132-10031204)
chr3 (269-309)||(10376509-10376549)
chr3 (269-309)||(10505150-10505190)
chr3 (1-73)||(11768422-11768494)
[»] chr8 (1 HSPs)
chr8 (249-305)||(44958346-44958402)
[»] chr2 (1 HSPs)
chr2 (268-309)||(26906261-26906302)
[»] chr5 (1 HSPs)
chr5 (268-308)||(19956981-19957021)


Alignment Details
Target: scaffold0083 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 50777 - 50472
Alignment:
Q  1 ttttcattgtttcaattattttgtaagaggtcggtccaatattaacccctgctgagctttgctttccagctttagatacagtactgttaaccattaattc 100  Q
    ||||| |||| |||||||||||||  || || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50777 ttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagctttaaatacagtactgttaaccattaattc 50678  T
Q  101 ccaaacagctaagtcttcatgagtttacctttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactct 200  Q
     || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50677 acatacagctaagtcttcatgagtttacctttactatatgcacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgagtct 50578  T
Q  201 tctttgagtcattgctcgtaatttccatcaaaatttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50577 tctttgagtcattgctcgtaatttccatcaaaatttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagct 50478  T
Q  301 tttctc 306  Q
    ||||||    
T  50477 tttctc 50472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 10076299 - 10076505
Alignment:
Q  2 tttcattgtttcaattattttgtaagaggtcggtccaatattaacccctgctgagctttgctttccagcttt-agatacagtactgttaaccattaattc 100  Q
    |||| |||| |||||||||||||  || || ||||||||||||||| || ||||||||| |||||||||||| | ||   ||    ||   |||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagctttcaaattttgt----ttcttcattaattc 10076394  T
Q  101 ccaaacagctaagtcttcatgagtttacc-tttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactc 199  Q
     || |||  ||||||||| ||||| |||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||| ||    
T  10076395 acatacatataagtcttcttgagtctaccctttacaatatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcacaagcgagtc 10076494  T
Q  200 ttctttgagtc 210  Q
    |||||||||||    
T  10076495 ttctttgagtc 10076505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 10376741 - 10376658
Alignment:
Q  134 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctc 217  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  10376741 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttgctc 10376658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 10364693 - 10364611
Alignment:
Q  134 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgct 216  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| |||||    
T  10364693 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgct 10364611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 10434771 - 10434708
Alignment:
Q  246 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctct 309  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||    
T  10434771 tggtttgctttaacaatatcattagaagatggctgcaactatgataggaggagcttttctctct 10434708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 10364525 - 10364462
Alignment:
Q  246 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctct 309  Q
    ||||||| ||||||||||||   |||||||||||||| ||||||| ||||||||||||||||||    
T  10364525 tggtttgctttaacaatatcaacagaagatggctgcaactatgataggaggagcttttctctct 10364462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 9838190 - 9838266
Alignment:
Q  233 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctct 309  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| ||||||||||||    
T  9838190 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctct 9838266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 9849068 - 9849144
Alignment:
Q  233 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctct 309  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| ||||||||||||    
T  9849068 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctct 9849144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10031132 - 10031204
Alignment:
Q  1 ttttcattgtttcaattattttgtaagaggtcggtccaatattaacccctgctgagctttgctttccagcttt 73  Q
    ||||| |||| ||||||||||||   || || ||||||||||||| |  || |||||||||||||||||||||    
T  10031132 ttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 10376549 - 10376509
Alignment:
Q  269 agaagatggctgcagctatgattggaggagcttttctctct 309  Q
    |||||||||||||| ||||||| ||||| ||||||||||||    
T  10376549 agaagatggctgcaactatgataggaggtgcttttctctct 10376509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 10505150 - 10505190
Alignment:
Q  269 agaagatggctgcagctatgattggaggagcttttctctct 309  Q
    |||||||||||||| ||||||| |||||| |||||||||||    
T  10505150 agaagatggctgcaactatgataggaggaacttttctctct 10505190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11768422 - 11768494
Alignment:
Q  1 ttttcattgtttcaattattttgtaagaggtcggtccaatattaacccctgctgagctttgctttccagcttt 73  Q
    ||||| |||| |||||||||||||  || || |||||||||||||||  || ||| ||||||||||| |||||    
T  11768422 ttttctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 44958402 - 44958346
Alignment:
Q  249 tttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttct 305  Q
    |||| |||||||||| | |||||||||||||||| ||||||| ||||||||||||||    
T  44958402 tttgctttaacaataacactagaagatggctgcaactatgataggaggagcttttct 44958346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 26906261 - 26906302
Alignment:
Q  268 tagaagatggctgcagctatgattggaggagcttttctctct 309  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  26906261 tagaagatggctgcagctatgataggagaagcttttctctct 26906302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 19956981 - 19957021
Alignment:
Q  268 tagaagatggctgcagctatgattggaggagcttttctctc 308  Q
    |||||||||| |||| ||||||| |||||||||||||||||    
T  19956981 tagaagatggttgcaactatgataggaggagcttttctctc 19957021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University