View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6828_low_7 (Length: 293)
Name: NF6828_low_7
Description: NF6828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6828_low_7 |
 | |
|
| [»] scaffold0897 (2 HSPs) |
| | |
|
| [»] scaffold0108 (2 HSPs) |
| | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0304 (3 HSPs) |
| | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0051 (2 HSPs) |
| | |
|
| [»] scaffold0282 (1 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0241 (1 HSPs) |
| | |
|
| [»] scaffold0023 (3 HSPs) |
| | |
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| [»] scaffold0046 (1 HSPs) |
| | |
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| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 7360737 - 7361020
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7360737 |
tcgaggctatcaccctgctgaggatgagcaatatgatctccagcgcttcttcctcaggtgtcgtctggacagcgagattcgatggttcctcgatctcttt |
7360836 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccattt--tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagc-tat |
197 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
7360837 |
ggctttggccaacttatgtaggactttccatcgaagaatcattttctgtttgtagcatttc-ttttgtaatggtttacttcgcgctcttttagagcttat |
7360935 |
T |
|
| Q |
198 |
tttgaca-tttatgtaaaccgcccatcagttggccccatgaaatgctatg-ttcgttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
||||| | ||| |||||||||||||| ||||||| ||||||||||||| || | ||||||| |||||| ||||||||||||| |
|
|
| T |
7360936 |
tttgaaattttgtgtaaaccgcccattagttggcttaatgaaatgctatgtttgggtttatcttttcgaattactcttgtatgat |
7361020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 14688735 - 14689018
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14688735 |
tcgaggctatcaccctgctgaggatgagcaatatgatctccagcgcttctgccttaggtgtcgtctggacagcgagattcgatggttcctcaatctcttt |
14688834 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccatttt--gtttgtagcatttctttttgtaatggtttactttgcgctcttttaa-agct-a |
196 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |||||||| | || | | |
|
|
| T |
14688835 |
ggctttggccaacttatgtaggtttttccatcgaagaatcattttctgtttgtagcatttcttt--gtaatggtttactttgtgctctttttagagttta |
14688932 |
T |
|
| Q |
197 |
ttttgacattta-tgtaaaccgcccatcagttggccccatgaaatgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||| |
|
|
| T |
14688933 |
ttttgaaattttgtgtaaaccgcccatcagttggccccatgaaatgctatgtttgaatttatcttttcgaattactcttgtatgat |
14689018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10787058 - 10786824
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
10787058 |
tcgaggttatcaccctgctgaggacgagcaatatgatctccagcgcttctgtctcaggtgtcgtctggatagcgaagttcgatggttcctcgatctcttt |
10786959 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccattttgt---ttgtagcatttctttttgtaatggtttac-tttgcgctcttttaaagc-t |
195 |
Q |
| |
|
|||||||||| ||| ||||| || |||||||| | ||||||| | || ||||||||| |||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
10786958 |
agctttggccaacttgcgtagggttttccatcgaaaagccattttctttcttatagcatttc-ttttgtaatggtttacttttgcgctcttttagagctt |
10786860 |
T |
|
| Q |
196 |
attttgaca-tttatgtaaaccgcccatcagttggc |
230 |
Q |
| |
|
||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
10786859 |
attttgaaactttgtgtaaaccgcccattagttggc |
10786824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10157831 - 10157694
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| ||||||||||| || | ||| |||| ||||| ||||||||||||||| | || || || ||| |||||||||| ||||| || ||| |
|
|
| T |
10157831 |
tcgaggatttcatcctgctgaggacgaactatataatcttcagcgtttctgccttaggtgttgtctcgatagtgagcttcgatggtttctcgaccttttt |
10157732 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaa |
138 |
Q |
| |
|
||||||||||| |||||||||| | | ||||||||||| |
|
|
| T |
10157731 |
ggctttggccaacttatgtaggtcattccatcgaagaa |
10157694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 10157665 - 10157560
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctcttttaaagctattttgacattta-----tgtaaaccgcccatcagttggccccatgaaatg |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | | ||||||| |||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
10157665 |
tttgtagcatttctttt-gtaatggtttactttgcgctctttagagcccattttgaagtttattttgtgtaaaccgcccattagttggccttatgaaatg |
10157567 |
T |
|
| Q |
242 |
ctatgtt |
248 |
Q |
| |
|
| ||||| |
|
|
| T |
10157566 |
ccatgtt |
10157560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24954619 - 24954371
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24954619 |
tcgaggctatcaccctgctgaggataagcaatatgatctccagcgcttctgccttaggtgtcgtctggacagcgagattcgatggttcctcgatctcttt |
24954520 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccatttt--gtttgtagcatttctttttgtaatggtttactttgcgctcttttaa-agc-ta |
196 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||| | ||| | |
|
|
| T |
24954519 |
agctttggccaacttatgtaggggtctccatcgaagaattattttctgtttgtagcatttctttt-gtaatggtttacttcgcgctctttttagagcctc |
24954421 |
T |
|
| Q |
197 |
ttttgacatt-tatgtaaaccgcccatcagttggccccatgaaatgctat |
245 |
Q |
| |
|
|||||| ||| | |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
24954420 |
ttttgaaattatgtgtaaaccgcccattagttggcttcatgaaatgctat |
24954371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 280
Target Start/End: Original strand, 23196288 - 23196429
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagct-attttga-----catttatgtaaaccgcccatcagttggccccatgaa |
238 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
23196288 |
tgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggccttatgaa |
23196386 |
T |
|
| Q |
239 |
atgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
|||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
23196387 |
atgctatgtttgaatttgtcttttcgaattactcttgtatgat |
23196429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 280
Target Start/End: Original strand, 23621893 - 23622033
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagct-attttga----catttatgtaaaccgcccatcagttggccccatgaaa |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||| ||| |||| ||||||||| |||||||| |||||| |
|
|
| T |
23621893 |
tgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagttcattttgaagtctttttgtgtagaccgcccattagttggccttatgaaa |
23621991 |
T |
|
| Q |
240 |
tgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
23621992 |
tgctatgtttgaatttgtcttttcgaattactcttgtatgat |
23622033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 22643228 - 22643093
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||| ||||| || || |||| ||||| ||||||||||| || ||||| || || ||| |||||||||| ||||| || ||| |
|
|
| T |
22643228 |
tcgagggtttcatcctgctgaagatgaacagtataatcttcagcgtttctgccttagatgccgcctcgatagtgagcttcgatggtttctcgaccttttt |
22643129 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
22643128 |
gggtttggccaacttatgtaggtccttccatcgaag |
22643093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23196124 - 23196259
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||| ||||| || ||| |||| ||||| ||||||||||| || || || || || ||| |||||||||| ||||| || ||| |
|
|
| T |
23196124 |
tcgagggtttcatcctgctgaagatgaacagtacaatcttcagcgtttctgccttagatgccgtcttgatagtgagcttcgatggtttctcgaccttttt |
23196223 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
23196224 |
gggtttggccaacttatgtaggtccttccatcgaag |
23196259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 24921247 - 24921207
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctctt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24921247 |
tttgtagcatttctttttgtaatggtttaccttgcgctctt |
24921207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 22643064 - 22643015
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagct |
195 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
22643064 |
tgtttgtagcatttctttt-gtaatggtttactttgctctcttttagagct |
22643015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 23621742 - 23621850
Alignment:
| Q |
14 |
cctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctctttggctttggccagc |
113 |
Q |
| |
|
|||||||| ||||| || ||| | || ||||| ||||||||||| || || || || || ||| |||||||||| ||||| || ||||| |||||||| | |
|
|
| T |
23621742 |
cctgctgaagatgaacagtacaaccttcagcgtttctgccttagatgccgtctcgatagtgagcttcgatggtttctcgacctttttgggtttggccaac |
23621841 |
T |
|
| Q |
114 |
ttatgtagg |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
23621842 |
ttatgtagg |
23621850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 14329266 - 14329514
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14329266 |
tcgaggctatcaccctgctgaggatgagcaatatgatctccaacgcttctgccttaggtgtcgtctggacagcgatattcgatggttcctcgatctcttt |
14329365 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccatttt--gtttgtagcatttctttttgtaatggtttactttgcgctcttttaa-agc-ta |
196 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||| |||||| |||||||||||||||||| |||| ||||||||| |||||||||| | ||| || |
|
|
| T |
14329366 |
ggctttggccaacttatgtagggatctccatcgaagaatcattttctgtttgtagcatttctttt-gtaacggtttacttcgcgctctttttagagccta |
14329464 |
T |
|
| Q |
197 |
ttttgacatt-tatgtaaaccgcccatcagttggccccatgaaatgctat |
245 |
Q |
| |
|
|||| | ||| | |||||||||||||| || |||| ||||||||||||| |
|
|
| T |
14329465 |
tttttaaattatgtgtaaaccgcccattagctggcttcatgaaatgctat |
14329514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 18167066 - 18167174
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagct-attttga-----catttatgtaaaccgcccatcagttggccccatgaa |
238 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
18167066 |
tgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggccttatgaa |
18167164 |
T |
|
| Q |
239 |
atgctatgtt |
248 |
Q |
| |
|
|||||||||| |
|
|
| T |
18167165 |
atgctatgtt |
18167174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 18166902 - 18167037
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||| ||||| || ||| |||| ||||| ||||||||||| || || || || || ||| |||||||||| ||||| || ||| |
|
|
| T |
18166902 |
tcgagggtttcatcctgctgaagatgaacagtacaatcttcagcgtttctgccttagatgccgtcttgatagtgagcttcgatggtttctcgaccttttt |
18167001 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
18167002 |
gggtttggccaacttatgtaggtccttccatcgaag |
18167037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 41375688 - 41375940
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||| ||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41375688 |
tcgaggttatcaccctgctgaggacgagcaatatgatctccagcacttctgcctcaggcgtcgtctggatagcgagattcgatggttcctcgatctcttt |
41375787 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccatt---ttgtttgtagcatttctttttgtaatggtttac-tttgcgctcttttaaagc-t |
195 |
Q |
| |
|
||||||||||| ||| |||||| || |||||||| ||||||| || ||| ||||||||| |||||||||||||||| ||||||||||| || ||| | |
|
|
| T |
41375788 |
ggctttggccaacttgtgtagggttttccatcgaaaaaccattttcttttttatagcatttc-ttttgtaatggtttacttttgcgctcttctagagctt |
41375886 |
T |
|
| Q |
196 |
attttgaca-tttatgtaaaccgcccatcagttggccccatgaaatgctatgtt |
248 |
Q |
| |
|
||||||| | ||| |||||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
41375887 |
attttgaaactttgtgtaaaccgcccattagttggcctaatggaatgctatgtt |
41375940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 22080874 - 22080697
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||| |
|
|
| T |
22080874 |
tcgagggtatcatcctgctgaagatgaacaatatgatctccagcgcttctgccttaggtgtcgtctagatagcgagattcgatggttcctcgatcttttt |
22080775 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccattt--tgtttgtagcatttctttttgtaatggtttact |
177 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22080774 |
ggatttggccagcttatgtagggctttccatcgaagaatcattttctgtttgtagcatttc-ttttgtagtggtttact |
22080697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 22800225 - 22800313
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttg-----acatttatgtaaaccgcccatcagttggcc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22800225 |
tttgtagcatttctttttgtaatggtttactttgcgctc--ttagagcctattttgaagacacatttatgtaaaccgcccatcagttggcc |
22800313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1729876 - 1729623
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| |||| || ||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1729876 |
tcgaggttatcgccttgctgaggacgagcaatatgatctccagcgcttctgcctcaggtgtcgtctggatagcgagattcgatggttcctcgatctcttt |
1729777 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaaccatt---ttgtttgtagcatttctttttgtaatggtttac-tttgcgctcttttaaagc-t |
195 |
Q |
| |
|
||||||||||| ||| ||||| || ||||| || ||||||| || ||| |||||||| ||| | ||||||||||| ||||||||||| || ||| | |
|
|
| T |
1729776 |
ggctttggccaacttgcgtagggttttccatcaaaaaaccattttcttttttatagcatttttttctataatggtttacttttgcgctcttctagagctt |
1729677 |
T |
|
| Q |
196 |
attttgaca-tttatgtaaaccgcccatcagttggccccatgaaatgctatgtt |
248 |
Q |
| |
|
||||||| | ||| |||||||| ||||| |||||||| ||| ||||||||||| |
|
|
| T |
1729676 |
attttgaaactttgtgtaaaccacccattagttggcctaatggaatgctatgtt |
1729623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 22339025 - 22339066
Alignment:
| Q |
147 |
tttgtagcatttctttt-tgtaatggtttactttgcgctctt |
187 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
22339025 |
tttgtagcatttcttttttgtaatggtttattttgcgctctt |
22339066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 280
Target Start/End: Original strand, 4282 - 4423
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagct-attttga----catttatgtaaaccgcccatcagttggccccatgaaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||| |||||||| |||||| |
|
|
| T |
4282 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttagagctcattttgaagtctttttgtgtaaaccgcccattagttggccttatgaaa |
4381 |
T |
|
| Q |
240 |
tgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
4382 |
tgctatgtttgaatttgtcttttcgaattactcttgtatgat |
4423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4118 - 4239
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||| ||||| || ||| |||| ||||| ||||||||||| ||||| || || || ||| |||||||||| ||||| || ||| |
|
|
| T |
4118 |
tcgagggtttcatcctgctgaagatgaacagtacaatcttcagcgtttctgccttagatgtcgtcttgatagtgagcttcgatggtttctcgaccttttt |
4217 |
T |
|
| Q |
101 |
ggctttggccagcttatgtagg |
122 |
Q |
| |
|
|| |||||||| |||||||||| |
|
|
| T |
4218 |
gggtttggccaacttatgtagg |
4239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 38814 - 38679
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||||||||| | ||| |||||||| | ||||||||||| |||||||| ||||| ||| |||||||||| ||||| || ||| |
|
|
| T |
38814 |
tcgaggatttcatcctgctgaggatgaactgtacaatctccagtgtttctgccttagatgtcgccttgacagtgagcttcgatggtttctcgaccttttt |
38715 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
38714 |
gggtttggccaacttatgtaggtcattccatcgaag |
38679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 38650 - 38541
Alignment:
| Q |
144 |
ttgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttga-----catttatgtaaaccgcccatcagttggccccatga |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||| | ||| |||||||||||||| |||||||| |||| |
|
|
| T |
38650 |
ttgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatga |
38552 |
T |
|
| Q |
238 |
aatgctatgtt |
248 |
Q |
| |
|
||||||||||| |
|
|
| T |
38551 |
aatgctatgtt |
38541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32924 - 33059
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||||||||| | ||| |||||||| | ||||||||||| |||||||| ||||| ||| |||||||||| ||||| || ||| |
|
|
| T |
32924 |
tcgaggatttcatcctgctgaggatgaactgtacaatctccagtgtttctgccttagatgtcgccttgacagtgagcttcgatggtttctcgaccttttt |
33023 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
33024 |
gggtttggccaacttatgtaggtcattccatcgaag |
33059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 33088 - 33230
Alignment:
| Q |
144 |
ttgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttga-----catttatgtaaaccgcccatcagttggccccatga |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||| | ||| |||||||||||||| |||||||| |||| |
|
|
| T |
33088 |
ttgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatga |
33186 |
T |
|
| Q |
238 |
aatgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
||||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
33187 |
aatgctatgtttgaatttgtcttttcgaattactcttgtatgat |
33230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 280
Target Start/End: Original strand, 14562674 - 14562816
Alignment:
| Q |
144 |
ttgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttga-----catttatgtaaaccgcccatcagttggccccatga |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||| | ||| |||||||||||||| |||||||| |||| |
|
|
| T |
14562674 |
ttgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatga |
14562772 |
T |
|
| Q |
238 |
aatgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
||||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
14562773 |
aatgctatgtttgaatttgtcttttcgaattactcttgtatgat |
14562816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 13284660 - 13284784
Alignment:
| Q |
14 |
cctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctctttggctttggccagc |
113 |
Q |
| |
|
|||||||||||||| | |||| |||| ||||||||||| ||| | ||||| || || || ||| |||| ||||| ||||| || |||||||||||||| | |
|
|
| T |
13284660 |
cctgctgaggatgaactatacaatcttcagcgcttctgtcttcgatgtcgtcttgatagtgagcttcggtggtttctcgacctttttggctttggccaac |
13284759 |
T |
|
| Q |
114 |
ttatgtaggacttcccatcgaagaa |
138 |
Q |
| |
|
||||||||| | | ||||||||||| |
|
|
| T |
13284760 |
ttatgtaggtcgttccatcgaagaa |
13284784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14562510 - 14562645
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||||||||| | ||| ||||| || | ||||||||||| |||||||| || || ||| |||||||||| ||||| || ||| |
|
|
| T |
14562510 |
tcgaggatttcatcctgctgaggatgaactgtacaatctcaagagtttctgccttagatgtcgccttgatagtgagcttcgatggtttctcgaccttttt |
14562609 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
14562610 |
gggtttggccaacttatgtaggtcattccatcgaag |
14562645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 14742409 - 14742449
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctctt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14742409 |
tttgtagcatttctttttgtaatggtttactttgcgctctt |
14742449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 280
Target Start/End: Original strand, 18469 - 18610
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttga-----catttatgtaaaccgcccatcagttggccccatgaa |
238 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||| | ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
18469 |
tgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaa |
18567 |
T |
|
| Q |
239 |
atgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
|||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
18568 |
atgctatgtttgaatttgtcttttcgaattactcttgtatgat |
18610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 12589 - 12689
Alignment:
| Q |
36 |
atctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctctttggctttggccagcttatgtaggacttcccatcgaa |
135 |
Q |
| |
|
|||| ||||| ||||||||||| |||| || || || ||| |||||||||| ||||| || ||||| |||||||| |||||||||| | | |||||||| |
|
|
| T |
12589 |
atcttcagcgtttctgccttagatgtcatcttgatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaa |
12688 |
T |
|
| Q |
136 |
g |
136 |
Q |
| |
|
| |
|
|
| T |
12689 |
g |
12689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 18340 - 18440
Alignment:
| Q |
36 |
atctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctctttggctttggccagcttatgtaggacttcccatcgaa |
135 |
Q |
| |
|
|||| ||||| ||||||||||| |||| || || || ||| |||||||||| ||||| || ||||| |||||||| |||||||||| | | |||||||| |
|
|
| T |
18340 |
atcttcagcgtttctgccttagatgtcatcttgatagtgagcttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaa |
18439 |
T |
|
| Q |
136 |
g |
136 |
Q |
| |
|
| |
|
|
| T |
18440 |
g |
18440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35888 - 35751
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||||||||| | |||| |||| ||||| ||||||||| | ||||| || || || ||| |||| ||||| ||||| || ||| |
|
|
| T |
35888 |
tcgagggtttcatcctgctgaggatgaactatacaatcttcagcgtttctgccttcgatgtcgtcttgatagtgagcttcggtggtttctcgaccttttt |
35789 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaa |
138 |
Q |
| |
|
||||||||||| |||||||||| | | ||||||||||| |
|
|
| T |
35788 |
ggctttggccaacttatgtaggtcattccatcgaagaa |
35751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 35722 - 35682
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctcttt |
188 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
35722 |
tttgtagcatttctttt-gtaatggtttattttgcgctcttt |
35682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 19307 - 19172
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| ||||| |||||||| | ||| |||||||| | ||||||||||| |||||||| || || ||| |||||||||| ||||| || ||| |
|
|
| T |
19307 |
tcgaggatttcatcctgccgaggatgaactttacaatctccagtgtttctgccttagatgtcgccttgatagtgagcttcgatggtttctcgaccttttt |
19208 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaag |
136 |
Q |
| |
|
|| |||||||| |||||||||| | | ||||||||| |
|
|
| T |
19207 |
gggtttggccaacttatgtaggtcattccatcgaag |
19172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 19143 - 19002
Alignment:
| Q |
144 |
ttgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagctattttga-----catttatgtaaaccgcccatcagttggccccatgaa |
238 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||||||| | ||||||| | ||| ||||||||| |||| |||||||| ||||| |
|
|
| T |
19143 |
ttgtttgtagcatttctttt-gtcatggtctactttgcgctcttttaggcccattttgaagtctcttttgtgtaaaccgtccattagttggccttatgaa |
19045 |
T |
|
| Q |
239 |
atgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
|||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
19044 |
atgctatgtttgaatttgtcttttcgaattactcttgtatgat |
19002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 74337 - 74217
Alignment:
| Q |
2 |
cgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctctttg |
101 |
Q |
| |
|
||||| ||||| |||||||| ||||| || || ||||| ||||| ||||||||||| ||||| || || || ||| |||||||||| ||||| || |||| |
|
|
| T |
74337 |
cgagggtatcatcctgctgaagatgaacagtatgatcttcagcgtttctgccttagatgtcgtctcgatagtgagcttcgatggtttctcgacctttttg |
74238 |
T |
|
| Q |
102 |
gctttggccagcttatgtagg |
122 |
Q |
| |
|
| ||| |||| |||||||||| |
|
|
| T |
74237 |
ggttttgccaacttatgtagg |
74217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 74168 - 74033
Alignment:
| Q |
151 |
tagcatttctttttgtaatggtttactttgcgctc-ttttaaag-ctattttga----catttatgtaaaccgcccatcagttggccccatgaaatgcta |
244 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| || | ||||||| ||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
74168 |
tagcatttctttt-gtaatggtttactttgcgctctttttagagcccattttgaagtctttttgtgtaaaccgcccattagttggctttatgaaatgcta |
74070 |
T |
|
| Q |
245 |
tgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
|||| | ||||||| |||||| ||||||||||||| |
|
|
| T |
74069 |
tgtttgaatttatcttttcgaattactcttgtatgat |
74033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 2589 - 2677
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttg-----acatttatgtaaaccgcccatcagttggcc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| || |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2589 |
tttgtagcatttctttttgtaatggtttactttgcactc--ttagagcctattttgaagacacctttatgtaaaccgcccatcagttggcc |
2677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 28362 - 28221
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaag-ctattttga-----catttatgtaaaccgcccatcagttggccccatgaa |
238 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||| || | |||||| | ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
28362 |
tgtttctagcatttctttt-gtaatggtttactttgcgctcttttagagcccgttttgaagtttcttttgtgtaaaccgcccattagttggccttatgaa |
28264 |
T |
|
| Q |
239 |
atgctatgttcg-ttttatctcctcgaatcactcttgtatgat |
280 |
Q |
| |
|
|||||||||| | ||| ||| |||||| ||||||||||||| |
|
|
| T |
28263 |
atgctatgtttgaatttgtcttttcgaattactcttgtatgat |
28221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28522 - 28388
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||| ||||| | ||| |||| ||||| ||||||||||| ||||| || || || ||| |||||||||| ||||| || ||| |
|
|
| T |
28522 |
tcgaggatttcatcctgctgaagatgaactgtacaatcttcagcgtttctgccttagatgtcgtcttgatagtgagcttcgatggtttctcgaccttttt |
28423 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaa |
135 |
Q |
| |
|
|| |||||||| |||||||||| | | |||||||| |
|
|
| T |
28422 |
gggtttggccaacttatgtaggtccttccatcgaa |
28388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 127977 - 128026
Alignment:
| Q |
145 |
tgtttgtagcatttctttttgtaatggtttactttgcgctcttttaaagct |
195 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
127977 |
tgtttgtagcatttctttt-gtaatggtttactttgcgctcttttagagct |
128026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 127813 - 127934
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| ||||| || ||||| || ||| |||| ||||| ||||||||||| || || || || || ||| |||||||||| ||||| || ||| |
|
|
| T |
127813 |
tcgagggtttcatcctgcggaagatgaacagtacaatcttcagcgtttctgccttagatgccgtcttgatagtgagcttcgatggtttctcgaccttttt |
127912 |
T |
|
| Q |
101 |
ggctttggccagcttatgtagg |
122 |
Q |
| |
|
|| |||||||| |||||||||| |
|
|
| T |
127913 |
gggtttggccaacttatgtagg |
127934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 19030446 - 19030583
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||||||||| | ||| | || |||| ||||||||||| ||||| || || || ||||| ||||||| ||||| || ||| |
|
|
| T |
19030446 |
tcgagggtttcatcctgctgaggatgaactatataaccttcagcatttctgccttagatgtcgtctcgatagtgagataagatggtttctcgaccttttt |
19030545 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcgaagaa |
138 |
Q |
| |
|
||||||||||| |||||||||| | | ||||||||||| |
|
|
| T |
19030546 |
ggctttggccaacttatgtaggtcattccatcgaagaa |
19030583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 19030617 - 19030722
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctcttttaaagctattttg-----acatttatgtaaaccgcccatcagttggccccatgaaatg |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | | |||||| | ||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
19030617 |
tttgtagcatttctttt-gtaatggtttactttgcgctctttagagcccattttggaattccttttgtgtaaaccgcccattagttggccttatgaaatg |
19030715 |
T |
|
| Q |
242 |
ctatgtt |
248 |
Q |
| |
|
||||||| |
|
|
| T |
19030716 |
ctatgtt |
19030722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 19464 - 19424
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctctt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19464 |
tttgtagcatttctttttgtaatggtttactctgcgctctt |
19424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 68896 - 68856
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctctt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
68896 |
tttgtagcatttctttttgtaatggtttactctgcgctctt |
68856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 78074 - 78034
Alignment:
| Q |
147 |
tttgtagcatttctttttgtaatggtttactttgcgctctt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
78074 |
tttgtagcatttctttttgtaatggtttactctgcgctctt |
78034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 8227 - 8196
Alignment:
| Q |
146 |
gtttgtagcatttctttttgtaatggtttact |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8227 |
gtttgtagcatttctttttgtaatggtttact |
8196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 57584 - 57553
Alignment:
| Q |
146 |
gtttgtagcatttctttttgtaatggtttact |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
57584 |
gtttgtagcatttctttttgtaatggtttact |
57553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 21515447 - 21515360
Alignment:
| Q |
36 |
atctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctctttggctttggccagcttatgtagga |
123 |
Q |
| |
|
||||||||| || |||||| | ||||| || || |||||||| ||||||| ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
21515447 |
atctccagcatttttgccttcgatgtcgtctcgatagcgagataagatggtttctcgacctttttggctttggccaacttatgtagga |
21515360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 122048 - 122180
Alignment:
| Q |
1 |
tcgaggctatcaccctgctgaggatgagcaatacgatctccagcgcttctgccttaggtgtcgcctggacagcgagattcgatggttcctcgatctcttt |
100 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||| ||||||||| || |||||| | ||||| || || |||||||| ||||||| ||||| || ||| |
|
|
| T |
122048 |
tcgaggatttcatcctgctgaggatgaattgtacaatctccagcatttttgccttcgatgtcgtctcgatagcgagataagatggtttctcgaccttttt |
122147 |
T |
|
| Q |
101 |
ggctttggccagcttatgtaggacttcccatcg |
133 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| |
|
|
| T |
122148 |
agctttggccaatttatgtaggacattccatcg |
122180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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