View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6830_low_1 (Length: 650)

Name: NF6830_low_1
Description: NF6830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6830_low_1
NF6830_low_1
[»] chr1 (11 HSPs)
chr1 (13-431)||(30697989-30698408)
chr1 (434-631)||(30697733-30697934)
chr1 (436-630)||(30688532-30688721)
chr1 (13-136)||(30689402-30689525)
chr1 (254-376)||(30689153-30689274)
chr1 (13-86)||(30656393-30656466)
chr1 (372-437)||(30688768-30688833)
chr1 (14-85)||(30710210-30710281)
chr1 (13-86)||(30671554-30671627)
chr1 (320-368)||(30718563-30718611)
chr1 (311-362)||(30671281-30671332)
[»] chr4 (1 HSPs)
chr4 (48-94)||(56539407-56539453)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 30698408 - 30697989
Alignment:
Q  13 tttggtgttagaggatttgggagttgaatatcttgagcaacttctaacaatatctgataatcaaagttcaagcagaaacagcaagttcaaatcatcaagt 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  30698408 tttggtgttagaggatttgggagttgaatatctcgagcaacttctaacaatatctgataatcaaagttcaagcagcaacagcaagttcaaatcatcaggt 30698309  T
Q  113 tgttaatttcagtaattttctttcttgatttttgaannnnnnncatcatcgcttaatctgcttagcgtgtttaggttttgtgatctttctttttattttc 212  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  30698308 tgttaatttcagtaattttctttcttgatttttgaatttttttcatcatcgcttaatccgcttagcgtgtttaggttttgcgatctttctttttattttc 30698209  T
Q  213 acatgaaacaaaattttattcgtaatttgagctcaaagagtgagtactagtagtagtatccattgaacaaaaaa-gaacatgacaagtaccttaatgcaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30698208 acatgaaacaaaattttattcgtaatttgagctcaaagagtgagtactagtagtagtatccattgaacaaaaaaagaacatgacaagtaccttaatgcaa 30698109  T
Q  312 atagacagtatttagacaaagacatcacatttaggacataaaatgtgccaacacatacccttaaaatggtgataaactcactactttgatcttccatttt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  30698108 atagacagtatttagacaaagacatcacatttaggacataaaatgtgccaacacatacccttacaatggtgataaaatcactactttgatcttccatttt 30698009  T
Q  412 gttagggaaaatctgcagat 431  Q
    ||||||||||||||||||||    
T  30698008 gttagggaaaatctgcagat 30697989  T

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Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 434 - 631
Target Start/End: Complemental strand, 30697934 - 30697733
Alignment:
Q  434 caaaaatttatgtggatagacacttcttgtatatcttgagcaactaaactgaattgcgtatcgctctacaaatttaagtactctcactta----agagtt 529  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  30697934 caaaaatttatgtggttagacacttcttgtatatcttgagcaactaaactgaattgcgtatcgctctacaaatttaagtactctcacttacttaagagtt 30697835  T
Q  530 acaagaaatgataaattaaacactatcatttgcaagaaactctcacacaattgatcacacacttgctttcttctcttgctatatggtttgagatgctaca 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30697834 acaagaaatgataaattaaacactatcatttgcaagaaactctcacacaattgatcacacacttgctttcttctcttgctatatggtttgagatgctaca 30697735  T
Q  630 ac 631  Q
    ||    
T  30697734 ac 30697733  T

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Target: chr1; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 436 - 630
Target Start/End: Complemental strand, 30688721 - 30688532
Alignment:
Q  436 aaaatttatgtggatagacacttcttgtatatcttgagcaactaaactgaattgcgtatcgctctacaaatttaagtactctcacttaagagttacaaga 535  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  30688721 aaaatttatgtgcttagacacttcttgcatatcttgagcaactaacctgaattgcgtatcactctacaaattttagtactctcacttaagagttacaaga 30688622  T
Q  536 aatgataaattaaacactatcatttgcaagaaactctcacacaattgatcacacacttgctttcttctcttgctatatggtttgagatgctacaa 630  Q
    |||||||    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  30688621 aatgata----aaacactatca-ttacaagaaactctcacacaattgatcacacacttgctttcttctcttgctatatggattgagatgttacaa 30688532  T

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Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 30689525 - 30689402
Alignment:
Q  13 tttggtgttagaggatttgggagttgaatatcttgagcaacttctaacaatatctgataatcaaagttcaagcagaaacagcaagttcaaatcatcaagt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  30689525 tttggtgttagaggatttgggagttgaatatcttgagcaacttctatccatatctgataatcaaagtacaagcagcaacagctagttcaaatcatcaagt 30689426  T
Q  113 tgttaatttcagtaattttctttc 136  Q
    ||||||||||||||||||||||||    
T  30689425 tgttaatttcagtaattttctttc 30689402  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 30689274 - 30689153
Alignment:
Q  254 gagtactagtagtagtatccattgaacaaaaaagaacatgacaagtaccttaatgcaaatagacagtatttagacaaagacatcacatttaggacataaa 353  Q
    |||||| ||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |    
T  30689274 gagtacgagtagtagtattcattgaacatataaaaacatgacaagtaccttaatgcaaatagacagtattaagacaaagacat-acatttaggacataca 30689176  T
Q  354 atgtgccaacacatacccttaaa 376  Q
    |||||||||||||||||||||||    
T  30689175 atgtgccaacacatacccttaaa 30689153  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 30656466 - 30656393
Alignment:
Q  13 tttggtgttagaggatttgggagttgaatatcttgagcaacttctaacaatatctgataatcaaagttcaagca 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  30656466 tttggtgttagaggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagca 30656393  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 30688833 - 30688768
Alignment:
Q  372 ttaaaatggtgataaactcactactttgatcttccattttgttagggaaaatctgcagataccaaa 437  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30688833 ttaaaatggtgttaaactcactactttgatcttccattttgttggggaaaatctgcagataccaaa 30688768  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 30710281 - 30710210
Alignment:
Q  14 ttggtgttagaggatttgggagttgaatatcttgagcaacttctaacaatatctgataatcaaagttcaagc 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || || |||||||||||| |||||    
T  30710281 ttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc 30710210  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 30671627 - 30671554
Alignment:
Q  13 tttggtgttagaggatttgggagttgaatatcttgagcaacttctaacaatatctgataatcaaagttcaagca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || || ||| |||||||| ||||||    
T  30671627 tttggtgttagaggatttgggagttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca 30671554  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 30718611 - 30718563
Alignment:
Q  320 tatttagacaaagacatcacatttaggacataaaatgtgccaacacata 368  Q
    |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  30718611 tattaagacaaagacataacatttaggacatacaatgtgccaatacata 30718563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 30671332 - 30671281
Alignment:
Q  311 aatagacagtatttagacaaagacatcacatttaggacataaaatgtgccaa 362  Q
    ||||||||||||| ||||||||||||  ||||||||||||  ||||||||||    
T  30671332 aatagacagtattaagacaaagacatagcatttaggacattcaatgtgccaa 30671281  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 56539407 - 56539453
Alignment:
Q  48 agcaacttctaacaatatctgataatcaaagttcaagcagaaacagc 94  Q
    |||||||||||| ||||||||||||||||||| || |||| ||||||    
T  56539407 agcaacttctaataatatctgataatcaaagtacatgcagcaacagc 56539453  T

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