View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6830_low_11 (Length: 235)
Name: NF6830_low_11
Description: NF6830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6830_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42963064 - 42963298
Alignment:
| Q |
1 |
ctaggccaggctttaggaggcacgacctacaagatgaaatttggtcaccatggaggaaatcatcctgttcgtaaccttcgaactggtcgtgttgaaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42963064 |
ctaggccaggctttaggaggcacgacctacaagatgaaatttggtcaccatggaggaaatcatcctgttcgtaaccttcgaactggtcgtgttgaaatta |
42963163 |
T |
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| Q |
101 |
gttctcaggtatgcaaaccaacgaaattcttttttgcacttttatttcttagcactccgccataatcatagtaattacttaaacccatttgaatctagaa |
200 |
Q |
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| T |
42963164 |
gttctcaggtatgcaaaccaacgaaattcttttttgcacttttatttcttagcattccgccataatcatagtaattacttaaacccatttgaatctagaa |
42963263 |
T |
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| Q |
201 |
tttagatttctgaactgagaatttattaactgaaa |
235 |
Q |
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| T |
42963264 |
tttagatttctgaactgagaatttattaactgaaa |
42963298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 43634779 - 43634891
Alignment:
| Q |
1 |
ctaggccaggctttaggaggcacgacctacaagatgaaatttggtcaccatggaggaaatcatcctgttcgtaaccttcgaactggtcgtgttgaaatta |
100 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43634779 |
ctaggccaggctttaggaggtacaacctacaagatgaaatttggtcaccatggaggaaatcatcctgttcgtaaccttcgaactggccgtgttgaaatta |
43634878 |
T |
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| Q |
101 |
gttctcaggtatg |
113 |
Q |
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| T |
43634879 |
gttctcaggtatg |
43634891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 20698631 - 20698671
Alignment:
| Q |
195 |
ctagaatttagatttctg-aactgagaatttattaactgaa |
234 |
Q |
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| T |
20698631 |
ctagaatttagatttctgaaactgtgaatttattaactgaa |
20698671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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