View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6830_low_2 (Length: 537)
Name: NF6830_low_2
Description: NF6830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6830_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 3978567 - 3978040
Alignment:
| Q |
1 |
aatgaaaaaagacaccaggaacatttgcatttcaagtgtaagccataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978567 |
aatgaaaaaagacaccaggaacatttgcatttcaagtgtaagccataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaa |
3978468 |
T |
|
| Q |
101 |
tcaatcttgcacaactacatggaaaagtatacccaaaaatcaatacaataaaa-tgatgcaaaaagactgcactagaatggataaagaacaatataagaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3978467 |
tcaatcttgcacaactacatggaaaagtatacccaaaaatcaatacaaaaaaaatgacgcaacaagactgcactagaatggataaagaacaatataagaa |
3978368 |
T |
|
| Q |
200 |
taaaaattcacaatataaatttgggaattgggagcaaatggatgtgctcgaggaattgtataaaactaggttaagaatcaaggtcacttacaccagccca |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978367 |
taaaaattcacaatataaatttgggaattgggagcaaatggatgtgctcgaggaattgtataaaactaggttaagaatcaaggtcacttacaccagccca |
3978268 |
T |
|
| Q |
300 |
ctctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatcaggttggtcacaatct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978267 |
ctctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgcgcagagggctttcaccaatttgacataatcaggttggtcacaatct |
3978168 |
T |
|
| Q |
400 |
tcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactttctaagca |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978167 |
tcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagcacgagactttctaagca |
3978068 |
T |
|
| Q |
500 |
ccagctgcagggcagtcatgatgtccat |
527 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
3978067 |
ccagctgcagggcagtcatgatgtccat |
3978040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 278 - 494
Target Start/End: Original strand, 39233482 - 39233698
Alignment:
| Q |
278 |
caaggtcacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgac |
377 |
Q |
| |
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||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| || |||| || | || |||||||||||||| ||||| |
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| T |
39233482 |
caagggcacttacaccagcccattctccaagggtctttgcatttggaacagtcaacaagctgacgctgtgttcagcacaaagggctttcaccaacttgac |
39233581 |
T |
|
| Q |
378 |
ataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccacca |
477 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
39233582 |
gtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatcactttagcactttcatgaagaccgcgtgcaagtccacca |
39233681 |
T |
|
| Q |
478 |
taagcacgagactttct |
494 |
Q |
| |
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||||||||||||||||| |
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| T |
39233682 |
taagcacgagactttct |
39233698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 39232721 - 39232797
Alignment:
| Q |
45 |
ataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaactacatg |
121 |
Q |
| |
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||||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
39232721 |
ataccttgacaaccacacaggagcaaccagttaccttcctagcttttccttctgaatcaattttgcacaactgcatg |
39232797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 284 - 527
Target Start/End: Complemental strand, 827084 - 826841
Alignment:
| Q |
284 |
cacttacaccagcccactctccaagtgtctttgcacttggaactgtcaacaagctaacattgtgctctgtgcagagggctttcaccaatttgacataatc |
383 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||| |||||||||| | |||||||||||||| | || || || || || | ||| ||||| || |
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| T |
827084 |
cacttacaccagcccattctccaagtgtcttcgcactaggaactgtcagaagactaacattgtgctcagcacaaagagccttgacaagtttaacatagtc |
826985 |
T |
|
| Q |
384 |
aggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctcaatcacttttgcaccttcatgaagacctcgtgcaagaccaccataagca |
483 |
Q |
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||| |||||||||||||| || ||||||||||||||| | | | ||||||||| ||||||||||||||||| || || ||||||||||||||||| || |
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| T |
826984 |
aggctggtcacaatcttctgcaagaacacaaagctgtcctgtgttcttctcaattacttttgcaccttcatggaggccacgtgcaagaccaccatatgcc |
826885 |
T |
|
| Q |
484 |
cgagactttctaagcaccagctgcagggcagtcatgatgtccat |
527 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||| |
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| T |
826884 |
aatgacttcctaagcacaagttgcaaggcagtcatgatgtccat |
826841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 827508 - 827437
Alignment:
| Q |
45 |
ataccttgacaaccacacaagagcatccggtaaccttcctagctttaccttctgaatcaatcttgcacaact |
116 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| |||||||||||||| || || || |||||||| ||||||| |
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| T |
827508 |
ataccttgaccaccacacaggagcagccggttaccttcctagcttttccctcggagtcaatcttacacaact |
827437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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