View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6830_low_8 (Length: 256)
Name: NF6830_low_8
Description: NF6830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6830_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42963346 - 42963591
Alignment:
| Q |
1 |
atgaaaactacaccagagttataagaactcctactccagagcaatagctcctaccagagaactagtcttcttacaaacttcaaattactatacataaata |
100 |
Q |
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| T |
42963346 |
atgaaaactacaccagagttataagaactcctactccagagcaatagctcctaccagagaactagtcttcttacaaacttcaaattactatacataaata |
42963445 |
T |
|
| Q |
101 |
cctcactctccgtattcttctcttttcatacattgttcttctacctgacttagtaactagctgcaacaaacatagtaactaactcttatttcacaacaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
42963446 |
cctcactctccgtattcttctcttttcatacattgttcttctacctgacttagtaactaactgcaacagacatagtaactaactcttatttcacaacaga |
42963545 |
T |
|
| Q |
201 |
atatccctctaaaaacaaggaaaatgctaactaactcttgatgtcc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42963546 |
atatccctctaaaaacaaggaaaatgctaactaactcttggtgtcc |
42963591 |
T |
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