View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6831_high_4 (Length: 400)

Name: NF6831_high_4
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6831_high_4
NF6831_high_4
[»] chr1 (12 HSPs)
chr1 (1-383)||(10978938-10979320)
chr1 (1-383)||(10903043-10903425)
chr1 (2-381)||(10914204-10914583)
chr1 (36-379)||(11028725-11029070)
chr1 (2-287)||(10932584-10932870)
chr1 (1-383)||(11010514-11010886)
chr1 (16-383)||(11005136-11005503)
chr1 (94-383)||(10993820-10994109)
chr1 (121-383)||(11032915-11033177)
chr1 (84-297)||(10901350-10901563)
chr1 (139-363)||(11007480-11007704)
chr1 (283-381)||(10974142-10974240)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 10978938 - 10979320
Alignment:
Q  1 tatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978938 tatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatct 10979037  T
Q  101 ccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatcca 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979038 ccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatcca 10979137  T
Q  201 ttgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979138 ttgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgt 10979237  T
Q  301 cacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 383  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979238 tacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 10979320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 10903043 - 10903425
Alignment:
Q  1 tatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatct 100  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||||| |||||||    
T  10903043 tatgtaattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattattatcatct 10903142  T
Q  101 ccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatcca 200  Q
    ||||| ||  ||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  10903143 ccaacgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatcca 10903242  T
Q  201 ttgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgt 300  Q
    |||||||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  10903243 ttgaaggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagt 10903342  T
Q  301 cacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 383  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||    
T  10903343 tacttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagt 10903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 381
Target Start/End: Original strand, 10914204 - 10914583
Alignment:
Q  2 atgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctc 101  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| || |||  || ||||||||    
T  10914204 atgtaattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctc 10914303  T
Q  102 caacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccat 201  Q
    |||||||  ||  ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  10914304 caacatctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccat 10914403  T
Q  202 tgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtc 301  Q
    ||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||     
T  10914404 tgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagtt 10914503  T
Q  302 acttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaa 381  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||    
T  10914504 acttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaa 10914583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 11029070 - 11028725
Alignment:
Q  36 ttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaa 135  Q
    |||||| ||||| ||| ||||||||||||||||| ||| |||||||||| ||| ||| |||  ||||||||||||||||| ||||||||||  |||||||    
T  11029070 ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa 11028971  T
Q  136 gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacac 235  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||||    
T  11028970 gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac 11028871  T
Q  236 cacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcg--tcacttcccttccatcatgtaatcgatcatatat 333  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||| ||    
T  11028870 cacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaat 11028771  T
Q  334 ccaaaaagggaaataaatttggctagattgctcagccattgcattc 379  Q
    ||| |||||||||||||||||||||||||| ||||||| |||||||    
T  11028770 ccagaaagggaaataaatttggctagattgttcagccaatgcattc 11028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 10932584 - 10932870
Alignment:
Q  2 atgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctc 101  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||| ||  || |||||    
T  10932584 atgtacttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctc 10932683  T
Q  102 caacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aacactttatcca 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  10932684 caacatcctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttcca 10932783  T
Q  201 ttgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgt 287  Q
    |||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10932784 ttgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt 10932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 11010514 - 11010886
Alignment:
Q  1 tatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatct 100  Q
    |||||||||||| | |||||||||| |||||||| |||||||||||||| ||||||||||||||||||  ||| |||||||||| ||| | |||          
T  11010514 tatgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa------ 11010606  T
Q  101 ccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatcca 200  Q
       |||||| ||| ||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  11010607 ---acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatcca 11010703  T
Q  201 ttgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgt 300  Q
    |||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||| |  || ||||||||||||||||| || ||||| ||    
T  11010704 ttgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgt 11010803  T
Q  301 cacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 383  Q
     ||||| ||||||||||| |||  |||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  11010804 tacttcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagt 11010886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 11005503 - 11005136
Alignment:
Q  16 agaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctact 115  Q
    |||||||| | |||||||||||||| || || ||||| | | ||||||| || | |||  ||| ||  ||||| ||| | |||||| || ||||||  ||    
T  11005503 agaaccaacacgagatcaggttggttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagct 11005404  T
Q  116 ggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgt 215  Q
    ||| |||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| ||      
T  11005403 ggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcac 11005304  T
Q  216 cgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatc 315  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||||||    
T  11005303 ctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatc 11005204  T
Q  316 atgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 383  Q
    ||||||  || |||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  11005203 atgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagt 11005136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 94 - 383
Target Start/End: Complemental strand, 10994109 - 10993820
Alignment:
Q  94 atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 193  Q
    |||||||| |||||| ||| |||||  ||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  10994109 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 10994010  T
Q  194 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt 293  Q
    ||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||||||| |    
T  10994009 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattct 10993910  T
Q  294 caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 383  Q
    |||| || ||||| ||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  10993909 caattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagt 10993820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 121 - 383
Target Start/End: Original strand, 11032915 - 11033177
Alignment:
Q  121 atcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggt 220  Q
    |||||||| | || ||| |||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||    |||    
T  11032915 atcttgtacataatagtcaggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggt 11033014  T
Q  221 tttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgta 320  Q
    || | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| |||||   ||| |||| |||||||||||| ||||    
T  11033015 ttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgta 11033114  T
Q  321 atcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagt 383  Q
    |  ||||||| | |||||||||||||||||| ||||| ||||| ||||||| |||||||||||    
T  11033115 actgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaagt 11033177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 297
Target Start/End: Original strand, 10901350 - 10901563
Alignment:
Q  84 ttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcat 183  Q
    ||||| ||| |||||||| || ||||||  ||||| |||||||| || ||| ||||||||| ||||| |||||||| ||||||||||||| | |||||||    
T  10901350 ttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcat 10901449  T
Q  184 ctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatct 283  Q
    ||| | ||||||||||||||||||||| ||    |||||||||||  ||||||| || |||||||||||| |||||||||||||||| ||||| | ||||    
T  10901450 ctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatct 10901549  T
Q  284 gtgtcattttcaat 297  Q
    |||||||| |||||    
T  10901550 gtgtcattctcaat 10901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 139 - 363
Target Start/End: Original strand, 11007480 - 11007704
Alignment:
Q  139 aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccac 238  Q
    ||||| |||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||    ||||| |  || |||||||||    
T  11007480 aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac 11007579  T
Q  239 aaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa 338  Q
    |||||||| ||||||||||||||||||||||| || || |||| |||  |||| ||||| || | ||| |||||||| |||||  ||||||| | |||||    
T  11007580 aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa 11007679  T
Q  339 aagggaaataaatttggctagattg 363  Q
    ||||||||||||  |||||||||||    
T  11007680 aagggaaataaacctggctagattg 11007704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 10974142 - 10974240
Alignment:
Q  283 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaa 381  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||    
T  10974142 tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaa 10974240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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