View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6831_high_8 (Length: 246)
Name: NF6831_high_8
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_high_8 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 8335774 - 8335901
Alignment:
| Q |
105 |
cattttacctcaatctttctttgtgtaacattatcgatctatcaaatcattctctctttctctccacctctctcaatatatggagcgtcctccaaacgtt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8335774 |
cattttacctcaatctttctttgtgtaacattatcgatctatcaaatcattctctctttctctccacct----------------cgtcctccaaacgtt |
8335857 |
T |
|
| Q |
205 |
ttcc--tattctccatttccactccaaatcaattcacccccctt |
246 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
8335858 |
ttcctatattctccatatccactccaaatcaattcacccacctt |
8335901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 8335484 - 8335592
Alignment:
| Q |
9 |
tttggtgttgaatgtgtgacgtcaaatatt---tctataatattcttttcaacaatgatatttgtacaccttgtaacttaaaacatccatttaatatatc |
105 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8335484 |
tttgatgttgaatgtgtgacatcaaatagtatatctataatattctttttaataatgatatttgtacaccttataacttaaaacatccatttaatatatc |
8335583 |
T |
|
| Q |
106 |
attttacct |
114 |
Q |
| |
|
||||||||| |
|
|
| T |
8335584 |
attttacct |
8335592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University