View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6831_high_9 (Length: 228)
Name: NF6831_high_9
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52180421 - 52180632
Alignment:
| Q |
1 |
tgcaatttggcgtgccatgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttttttaaatgttt |
100 |
Q |
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| T |
52180421 |
tgcaatttggcgtgccatgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttttttaaatgttt |
52180520 |
T |
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| Q |
101 |
taattctttggcatttcttgaagtcgtatgttgatacgaactgtcaaaggaaggatgcttcttccaaaagagaggatgactctgctaagggtacttcagc |
200 |
Q |
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| T |
52180521 |
taattctttggcatttcttgaagtcgtatgttgatacgaactgtcaaaggaaggatgcttcttccaaaagagaggatgactctgctaagggtacttcagc |
52180620 |
T |
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| Q |
201 |
acatgataatta |
212 |
Q |
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|||||||||||| |
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| T |
52180621 |
acatgataatta |
52180632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 7297164 - 7297245
Alignment:
| Q |
16 |
catgttggagtacttttgttgcattattctagaggaggatgtaatggaattggagcatgggtttttaattcttttttaaatg |
97 |
Q |
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|||||||| || |||||||| |||| | |||||| || |||||||||||||| || |||||||| |||||| |||| |||| |
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| T |
7297164 |
catgttggtgttcttttgttacatttatttagaggtgggtgtaatggaattggtgcttgggttttcaattctattttgaatg |
7297245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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