View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6831_low_16 (Length: 206)
Name: NF6831_low_16
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 38343234 - 38343067
Alignment:
| Q |
22 |
acaacattgatttcttcgtatagaatttgtacgggtgttacaaggcgtaagattagccatttcttgttttaattttgctctaagttatttcatatctatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38343234 |
acaacattgatttcttcgtatagaatttgtacgggtgttacaaggcgtaagattagccatttcttgttttaattttgctctaagttatttcatatctatc |
38343135 |
T |
|
| Q |
122 |
atgtgattctattaataatgcaacctattttcccttgctaatgttgtagagaatgttgctgctccatc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38343134 |
atgtgattctattaataatgcaacctattttcccttgctaatgttgtagagaatgttgctgctccatc |
38343067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University