View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6831_low_2 (Length: 729)
Name: NF6831_low_2
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 725
Target Start/End: Complemental strand, 43062159 - 43061436
Alignment:
| Q |
1 |
actcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062159 |
actcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttgga |
43062060 |
T |
|
| Q |
101 |
gactcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattgaaattaaacaataatgcaacctttaccttcacccgggttttgc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43062059 |
gactcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattgaaatcaaacaataatgcaacctttaccttcacccgggttttgc |
43061960 |
T |
|
| Q |
201 |
ccgacaaatgcaatgttgtgttctaggttctacctacggtatttgcatacgtagaattttattttagttaccaaatatttcttttctgtaattctaatga |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061959 |
ccgaaaaatgcaatgttgtgttctaggttctacctacggtatttgcatacgtagaattttattttagttaccaaatatttcttttctgtaattctaatga |
43061860 |
T |
|
| Q |
301 |
tttgcgatgaaatttgttatttgtttattcattcattgttaaacatgttataccatcatgaagtgtgtactttggttctcgagaa--nnnnnnnnngatt |
398 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
43061859 |
tttgcgatgaaattttttatttgtttattcattcattgttaaacatgttataccatcatgtagtgtgtactttggttctcgagaattttttttttttatt |
43061760 |
T |
|
| Q |
399 |
tgaatttgaactcatcgttgatgcttcttggttttcttttgctcgcgattaattttctaatttagctcttaacgggaaacattaacttatgaaaaattca |
498 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43061759 |
tgaatttgaactca---ttgatgcttcttggatttcttttgcttgcgattaattttctaatttagctcttaatgggaaacattaacttatgaaaaattca |
43061663 |
T |
|
| Q |
499 |
tataactagcgtatttacccggcgttgcctaggttacatatagtaaggtttcaacaaaattttactgctcagaatgaaaaaattctagtttgcaagaaag |
598 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061662 |
tataactagcgtatttacccggcgttgcccaggttacatatagtaaggtttcaacaaaattttactgctcagaatgaaaaaattctagtttgcaagaaag |
43061563 |
T |
|
| Q |
599 |
gtttcaacaaaatttgctctagtgtgaagaaaagcagtaaatcaacatatttatcttaaccactactatattcatataatcatatgtactcattgttaca |
698 |
Q |
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| T |
43061562 |
gtttcaacaaaatttgctctagtgtgaagaaaagcagtaaatcaacatatttatcttaaccactactatattcatataatcatatgtactcattgttaca |
43061463 |
T |
|
| Q |
699 |
actttcattgtcgtctccaattctcat |
725 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
43061462 |
actttcattgtcgtctccaattctcat |
43061436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 43054907 - 43054751
Alignment:
| Q |
2 |
ctcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggag |
101 |
Q |
| |
|
||||||||||||||| | ||||| |||| |||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
43054907 |
ctcgacaatgatcaaatttcggagttcaacaaagataagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggag |
43054808 |
T |
|
| Q |
102 |
actcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattga |
158 |
Q |
| |
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|||| ||||| | | | ||| |||||||||||||| ||||||| |||||| |||| |
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| T |
43054807 |
actccatatccagaaagttcaaacctaaggtcaaatgcgacctcacagttcctttga |
43054751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 43049373 - 43049217
Alignment:
| Q |
2 |
ctcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggag |
101 |
Q |
| |
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||||||| ||||||||||| || || | |||||||||||||| || |||||||| ||||||||||| ||| ||||| ||||||||||||| |||||| | |
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| T |
43049373 |
ctcgacagcgatcaagtctccgagtttaacaaagacaagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttgggg |
43049274 |
T |
|
| Q |
102 |
actcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattga |
158 |
Q |
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| | |||||| | |||||||||||||| ||||||||| |||||||||| |||| |
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| T |
43049273 |
atttgatatcgggtgattacaagcctaaggtgaaatgtgacttcaaagttcctttga |
43049217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 43024222 - 43024145
Alignment:
| Q |
2 |
ctcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttc |
79 |
Q |
| |
|
||||||||| |||||||||| || || | |||||| |||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
43024222 |
ctcgacaataatcaagtctctgagtttaacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttc |
43024145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 540
Target Start/End: Original strand, 11874008 - 11874047
Alignment:
| Q |
501 |
taactagcgtatttacccggcgttgcctaggttacatata |
540 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| |
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| T |
11874008 |
taactagcgtatttacccgacgttgcctgggttacatata |
11874047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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