View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6831_low_3 (Length: 517)

Name: NF6831_low_3
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6831_low_3
NF6831_low_3
[»] chr3 (3 HSPs)
chr3 (24-386)||(54591999-54592362)
chr3 (402-475)||(54591380-54591453)
chr3 (360-389)||(17105273-17105302)
[»] chr6 (2 HSPs)
chr6 (345-389)||(10338605-10338649)
chr6 (352-389)||(1960348-1960385)
[»] chr8 (5 HSPs)
chr8 (360-410)||(3943761-3943811)
chr8 (360-389)||(10440384-10440413)
chr8 (361-389)||(8431282-8431310)
chr8 (360-388)||(12170604-12170632)
chr8 (360-388)||(12415032-12415060)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 386
Target Start/End: Complemental strand, 54592362 - 54591999
Alignment:
Q  24 aatatcacaagtctagatagcagatgaa-tttggtatatttattcacatgtttcagatagccagctagatccttttggaatgtagtaattgggagaaaag 122  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54592362 aatatcacaagtctagatagcagatgaaatttggtatatgtattcacatgtttcagatagccagctagatccttttggaatgtagtaattgggagaaaag 54592263  T
Q  123 atccgaaaaaccaattccaaaaatctgagaactgaataaaataacatagtctgcactttttactagttcaacgtatagcaccagtggtggctgattatga 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54592262 atccgaaaaaccaattccaaaaatctgagaactgaataaaataacatagtctgcactttttactagttcaacgtatagcaccagtggtggctgattatga 54592163  T
Q  223 ccaccccaatttcagatacttgttttgtctagttgaagtgaaattgtgaaattccttttaaacaagcattagtaacctatgaagcatttacattttacac 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54592162 ccaccccaatttcagatacttgttttgtctagttgaagtgaaattgtaaaattccttttaaacaagcattagtaacctatgaagcatttacattttacac 54592063  T
Q  323 atacatggcacggacgccaacatgtaaacattgttagtaatttaagaaaataaaagtgattgaa 386  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  54592062 atacatggcacggacgccgacatgtaaacattgttagtaatttgagaaaataaaagtgattgaa 54591999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 54591453 - 54591380
Alignment:
Q  402 gtattgtgtcggcctctaacaccaaagcgtgttgaacattggacatgtgataggaaccttgaagataagaaaat 475  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54591453 gtatcgtgtcggcctctaacaccaaagcgtgttgaacattggacatgtgataggaaccttgaagataagaaaat 54591380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 389
Target Start/End: Original strand, 17105273 - 17105302
Alignment:
Q  360 taatttaagaaaataaaagtgattgaatgt 389  Q
    ||||||||||||||||||||||||||||||    
T  17105273 taatttaagaaaataaaagtgattgaatgt 17105302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 10338605 - 10338649
Alignment:
Q  345 tgtaaacattgttagtaatttaagaaaataaaagtgattgaatgt 389  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||    
T  10338605 tgtaaacattgataataatttaagaaaatagaagtgattgaatgt 10338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 1960385 - 1960348
Alignment:
Q  352 attgttagtaatttaagaaaataaaagtgattgaatgt 389  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  1960385 attggtagtaatttaagaaaatgaaagtgattgaatgt 1960348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 3943761 - 3943811
Alignment:
Q  360 taatttaagaaaataaaagtgattgaatgtcacggtatgtttgtattgtgt 410  Q
    |||||||||||||||||||||||||||||| ||   ||||| |||||||||    
T  3943761 taatttaagaaaataaaagtgattgaatgtaaccacatgttagtattgtgt 3943811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 389
Target Start/End: Original strand, 10440384 - 10440413
Alignment:
Q  360 taatttaagaaaataaaagtgattgaatgt 389  Q
    ||||||||||||||||||||||||||||||    
T  10440384 taatttaagaaaataaaagtgattgaatgt 10440413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 389
Target Start/End: Complemental strand, 8431310 - 8431282
Alignment:
Q  361 aatttaagaaaataaaagtgattgaatgt 389  Q
    |||||||||||||||||||||||||||||    
T  8431310 aatttaagaaaataaaagtgattgaatgt 8431282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 388
Target Start/End: Original strand, 12170604 - 12170632
Alignment:
Q  360 taatttaagaaaataaaagtgattgaatg 388  Q
    |||||||||||||||||||||||||||||    
T  12170604 taatttaagaaaataaaagtgattgaatg 12170632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 388
Target Start/End: Original strand, 12415032 - 12415060
Alignment:
Q  360 taatttaagaaaataaaagtgattgaatg 388  Q
    |||||||||||||||||||||||||||||    
T  12415032 taatttaagaaaataaaagtgattgaatg 12415060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University