View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6831_low_4 (Length: 450)

Name: NF6831_low_4
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6831_low_4
NF6831_low_4
[»] chr1 (7 HSPs)
chr1 (19-439)||(12558949-12559355)
chr1 (310-416)||(20621705-20621811)
chr1 (324-418)||(27831651-27831745)
chr1 (325-383)||(27686708-27686766)
chr1 (332-382)||(41649125-41649175)
chr1 (312-346)||(49110804-49110838)
chr1 (325-418)||(21692466-21692558)
[»] chr3 (3 HSPs)
chr3 (312-418)||(10449497-10449603)
chr3 (319-418)||(11286039-11286138)
chr3 (320-389)||(14790132-14790201)
[»] chr5 (4 HSPs)
chr5 (322-415)||(35636031-35636124)
chr5 (324-414)||(20165670-20165760)
chr5 (324-418)||(24033576-24033670)
chr5 (324-409)||(31619730-31619814)
[»] chr2 (6 HSPs)
chr2 (324-418)||(35990529-35990623)
chr2 (324-389)||(4485696-4485761)
chr2 (325-418)||(36119821-36119914)
chr2 (329-388)||(3335631-3335690)
chr2 (325-382)||(18645144-18645201)
chr2 (321-389)||(31741295-31741363)
[»] chr4 (8 HSPs)
chr4 (316-418)||(22812277-22812376)
chr4 (313-418)||(25548004-25548104)
chr4 (325-416)||(46195379-46195470)
chr4 (325-415)||(19682945-19683035)
chr4 (329-382)||(13201060-13201112)
chr4 (309-368)||(35367428-35367488)
chr4 (326-418)||(38065305-38065397)
chr4 (329-389)||(40592650-40592710)
[»] chr8 (3 HSPs)
chr8 (324-418)||(39591204-39591298)
chr8 (325-418)||(31804778-31804871)
chr8 (313-418)||(27546314-27546419)
[»] chr7 (6 HSPs)
chr7 (325-418)||(5362037-5362130)
chr7 (324-383)||(20162010-20162069)
chr7 (324-379)||(42907880-42907935)
chr7 (312-415)||(3183612-3183715)
chr7 (324-383)||(16871711-16871770)
chr7 (323-418)||(31451059-31451154)
[»] chr6 (1 HSPs)
chr6 (325-416)||(13341414-13341505)
[»] scaffold0633 (1 HSPs)
scaffold0633 (332-382)||(5821-5871)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 12559355 - 12558949
Alignment:
Q  19 tttattttccttcaatctttttgacattaggttgagatttttccattaagcttatctcttttgttttcagatagttgcactcattatcataaattagggt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  12559355 tttattttccttcaatctttttgacattaggttgagatttttccattaagct-acctcttttgttttcagatagttgcactcattatcataaattagggt 12559257  T
Q  119 ttcactttaccaaatcaggagaaacttgtggttccttccctcaaaaagtgnnnnnnnnnnnnnnnnncttaaccctctagttctcataggaaaaagtcct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||    
T  12559256 ttcactttaccaaatcaggagaaacttgtggttccttccctcaaaaagtgttttttccttttcttttcttaaccctctagttctcataggaaaaagtcct 12559157  T
Q  219 cataatccggagtttgaccgctaagtaaatttgaccaaagatttttccggttaggattggaactcagtaattttaannnnnnnnnnnngaaatatactct 318  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||            |||||||||       
T  12559156 cataatccggagtttgaccgctaagtaaagttgaccaaagattgttccggttaggattggaactcagtaattttaa---tttttttttgaaatatac--- 12559063  T
Q  319 ctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
           |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12559062 -------atgaaatataagcaaaaaaggtagttgaaaagttgatgtatatggactaaatttttaatcacatacaatgactttttaactaccacttttgct 12558970  T
Q  419 ctacaaagcacaaacaccaaa 439  Q
     ||||||||||| ||| ||||    
T  12558969 ttacaaagcacagacatcaaa 12558949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 416
Target Start/End: Complemental strand, 20621811 - 20621705
Alignment:
Q  310 atatactctctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactacc 409  Q
    |||||||| |||| |||||||| ||||||||||| | || ||||||| ||||||||| ||||||||| |||||| ||| |||| |||  ||| || ||||    
T  20621811 atatactccctctcgaatgaaacataagcaaaaacggtatttgaaaatttgatgcatgtggactaaaattttaaccacttgcattgaaatttcaattacc 20621712  T
Q  410 acttttg 416  Q
    |||||||    
T  20621711 acttttg 20621705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 27831745 - 27831651
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||| ||||||||||||||| | || |||||| |||| || ||  | ||||||||||||| |||||||| |||  ||| ||||||||||||||||    
T  27831745 gaataaaatataagcaaaaatggtagttgaaaggttggtgtatgcgaactaaatttttaaccacatgcattgagctttcaactaccacttttgct 27831651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 27686708 - 27686766
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaa 383  Q
    ||||||||||||| ||||||  || |||| ||||||||  |||||||||||||||||||    
T  27686708 aatgaaatataagtaaaaaatgtacttgagaagttgatctatatggactaaatttttaa 27686766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 41649125 - 41649175
Alignment:
Q  332 tataagcaaaaaagataattgaaaagttgatgcatatggactaaattttta 382  Q
    ||||||||||| || || |||||||||||||| || |||||||||||||||    
T  41649125 tataagcaaaataggtagttgaaaagttgatgtatgtggactaaattttta 41649175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 49110804 - 49110838
Alignment:
Q  312 atactctctctagaatgaaatataagcaaaaaaga 346  Q
    ||||| |||||||||||||||||||||||||||||    
T  49110804 atactttctctagaatgaaatataagcaaaaaaga 49110838  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 21692466 - 21692558
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||||| |||||||||||| | |  |||||||||||||| || |  ||||||||||||| ||||| || |||| ||| |||||||| |||||||    
T  21692466 aatgaattataagcaaaaagggtg-ttgaaaagttgatgtatgtatactaaatttttaaccacatacattgacctttcaactaccatttttgct 21692558  T

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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 418
Target Start/End: Original strand, 10449497 - 10449603
Alignment:
Q  312 atactctctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccac 411  Q
    |||||| ||||  ||||||||||||||||||| |||| || ||||||||||| |||||||||||||| |||| ||||| || |||||||| |||||||||    
T  10449497 atactccctctgaaatgaaatataagcaaaaaggatagttcaaaagttgatgtatatggactaaattcttaaccacatacattgacttttcaactaccac 10449596  T
Q  412 ttttgct 418  Q
    |||||||    
T  10449597 ttttgct 10449603  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 418
Target Start/End: Original strand, 11286039 - 11286138
Alignment:
Q  319 ctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||| ||||||||||||| |||||| | || |||||||||||||| || |||||||||||||||| ||| | ||  ||||||| |||||||| |||||||    
T  11286039 ctctggaatgaaatataaacaaaaagggtagttgaaaagttgatgtatgtggactaaatttttaaccacgtacacggacttttcaactaccatttttgct 11286138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 14790201 - 14790132
Alignment:
Q  320 tctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacat 389  Q
    ||||| |||||||||||||||||| |||| || |||||||||||  |   ||||||||||||||| ||||    
T  14790201 tctaggatgaaatataagcaaaaacgatagttaaaaagttgatgtttgcagactaaatttttaattacat 14790132  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 35636124 - 35636031
Alignment:
Q  322 tagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccactttt 415  Q
    |||||| |||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| || ||| | ||| |||| |||||||||||||    
T  35636124 tagaataaaatataaacaaaaacgataagtgaaaagttgatgtatatggactaaatttttaaccatatgtattgatttttcaactaccactttt 35636031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 414
Target Start/End: Complemental strand, 20165760 - 20165670
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttt 414  Q
    |||||||||||||||||||||||||  |||||| |||||| | || |||||| |||||||||| ||  |||||||||  ||||||||||||    
T  20165760 gaatgaaatataagcaaaaaagatagatgaaaatttgatgtacatagactaattttttaatcatatataatgactttacaactaccacttt 20165670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 24033576 - 24033670
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||||||||||||| ||||||  || | |||| ||||||| || || ||||||||||||| ||||| || |||||||| ||| ||||||||||||    
T  24033576 gaatgaaatataaggaaaaaaagtagtggaaatgttgatgtatgtgtactaaatttttaaccacatacattgacttttcaacaaccacttttgct 24033670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 409
Target Start/End: Original strand, 31619730 - 31619814
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactacc 409  Q
    |||||||||||||  ||||| ||||||| |||||| |||| || |||||||||||||||| ||||| || |||  |||||||||||    
T  31619730 gaatgaaatataataaaaaaggataattaaaaagt-gatgtatgtggactaaatttttaaccacattcattgatattttaactacc 31619814  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 35990529 - 35990623
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||||||||||||| ||| ||| || |||||||||||||| || | |||||||||||||| ||||| || |||||||| ||||||| ||||||||    
T  35990529 gaatgaaatataagtaaagaaggtagttgaaaagttgatgtatgtagactaaatttttaaccacatacattgacttttcaactaccgcttttgct 35990623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 4485761 - 4485696
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacat 389  Q
    |||| |||||||| |||||| |||| |||||||||||||| |||||||||| ||||||||||||||    
T  4485761 gaatcaaatataaacaaaaatgatagttgaaaagttgatgtatatggactacatttttaatcacat 4485696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 36119914 - 36119821
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    ||||||||||||||||||| ||||||||||||||||  | || |||||||||||||||| ||||| |  |||| | | |||||||| |||||||    
T  36119914 aatgaaatataagcaaaaatgataattgaaaagttgtggtatgtggactaaatttttaaccacatacgttgacctctcaactaccatttttgct 36119821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 3335631 - 3335690
Alignment:
Q  329 aaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcaca 388  Q
    |||||||| |||| ||| || ||||||||||||||||||| |||||||||||||| ||||    
T  3335631 aaatataaacaaataaggtagttgaaaagttgatgcatatagactaaatttttaaccaca 3335690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 18645144 - 18645201
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaattttta 382  Q
    |||||||||||| |||||| |||| |||||||||||||| ||||  | ||||||||||    
T  18645144 aatgaaatataaacaaaaatgatagttgaaaagttgatgtatataaattaaattttta 18645201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 31741363 - 31741295
Alignment:
Q  321 ctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacat 389  Q
    ||||||||||||||||||||| | | || ||||||||| |||| |||||||   ||||||||| |||||    
T  31741363 ctagaatgaaatataagcaaatagggtagttgaaaagtcgatgtatatggatggaatttttaaccacat 31741295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 22812376 - 22812277
Alignment:
Q  316 tctctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccactttt 415  Q
    |||||||||||| |||||||||||||||   || ||||||| || |||   ||||||||||||||||||||||| ||||||||||||||  | |||||||    
T  22812376 tctctctagaataaaatataagcaaaaa---tagttgaaaaattaatgttgatggactaaatttttaatcacatacaatgactttttaagcatcactttt 22812280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 25548004 - 25548104
Alignment:
Q  313 tactctctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccact 412  Q
    ||||| ||| |||||||||||||||||||||||  | |||||||| |     || |||||||||||||||| ||| |||| |||| ||| ||||||||||    
T  25548004 tactccctccagaatgaaatataagcaaaaaaggaagttgaaaaggt-----atgtggactaaatttttaaccacgtgcattgacatttcaactaccact 25548098  T
Q  413 tttgct 418  Q
    ||||||    
T  25548099 tttgct 25548104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 46195379 - 46195470
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttg 416  Q
    ||||||||||||| |||||||| |  |||| ||||||||||| |||||||| ||||||| |||||  | |||||||| ||||  ||||||||    
T  46195379 aatgaaatataaggaaaaaagacaggtgaagagttgatgcatgtggactaactttttaaccacataaattgacttttcaactttcacttttg 46195470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 19683035 - 19682945
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccactttt 415  Q
    |||||||||||||||||| ||||| || ||||||||||| || |||| ||||||||| |  || | || |||| ||| |||||||||||||    
T  19683035 aatgaaatataagcaaaagagatagtttaaaagttgatgtatgtggattaaattttttacaacgtacattgacatttcaactaccactttt 19682945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 13201112 - 13201060
Alignment:
Q  329 aaatataagcaaaaaagataattgaaaagttgatgcatatggactaaattttta 382  Q
    ||||||||||||||||| ||  |||||| |||||| ||||||||||||||||||    
T  13201112 aaatataagcaaaaaag-tagctgaaaaattgatgtatatggactaaattttta 13201060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 35367428 - 35367488
Alignment:
Q  309 aatatactctctctagaatgaaatataagcaaaaaagataattgaaaa-gttgatgcatat 368  Q
    |||||||||| |||| | ||||||||||||||||| ||||||| ||||  |||||||||||    
T  35367428 aatatactctatctaaattgaaatataagcaaaaatgataattaaaaatattgatgcatat 35367488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 418
Target Start/End: Complemental strand, 38065397 - 38065305
Alignment:
Q  326 atgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||||||||||||||||| ||||  ||||||  ||||  ||   |||||||||||||||||||| || ||| |||| ||||| || |||||||    
T  38065397 atgaaatataagcaaaaaggatagatgaaaatctgatatatggagactaaatttttaatcacatacattgatttttcaactatcagttttgct 38065305  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 40592710 - 40592650
Alignment:
Q  329 aaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacat 389  Q
    |||||||| | ||||| ||| |||||||||| ||| ||||| ||||||||||||| |||||    
T  40592710 aaatataaacgaaaaaaatagttgaaaagttcatggatatgaactaaatttttaaccacat 40592650  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 39591204 - 39591298
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    ||||||||||||||||||||  | | | |||||||||||| || |||||||||||||||| ||||| || |||| ||| ||||| ||||||||||    
T  39591204 gaatgaaatataagcaaaaataacagtcgaaaagttgatgtatctggactaaatttttaaccacatacattgacctttcaactagcacttttgct 39591298  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 31804871 - 31804778
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||||||||||| |||||| | || |||||||||||| | ||||| |||||||| |||| |||||||| |||||||| || |||||| ||||||    
T  31804871 aatgaaatataaacaaaaatggtagttgaaaagttgaggtatatgtactaaattcttaaccacatgcattgacttttcaattaccacatttgct 31804778  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 27546314 - 27546419
Alignment:
Q  313 tactctctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccact 412  Q
    ||||||||| ||||||||||| || |||| |   ||||||||||||||||| |||| | ||||||||||||  | || || | |||||| ||||| ||||    
T  27546314 tactctctccagaatgaaatagaaacaaatagagtaattgaaaagttgatgtatataggctaaatttttaacaatatacattaacttttcaactatcact 27546413  T
Q  413 tttgct 418  Q
    ||||||    
T  27546414 tttgct 27546419  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 5362130 - 5362037
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    |||||||||||||||||||   || |||||||||||| | || | ||||||||||| || ||||| || ||||||||||||||||| |||||||    
T  5362130 aatgaaatataagcaaaaagagtagttgaaaagttgaagtatgtagactaaattttcaaccacatacattgactttttaactaccatttttgct 5362037  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 20162069 - 20162010
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaa 383  Q
    |||||||||||||||||||| | || |||||||||||||| || ||||||||||| ||||    
T  20162069 gaatgaaatataagcaaaaagggtacttgaaaagttgatgtatgtggactaaattcttaa 20162010  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 42907935 - 42907880
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaattt 379  Q
    |||||||||||||||| ||| | || |||||||||||||| |||||||||||||||    
T  42907935 gaatgaaatataagcagaaagggtagttgaaaagttgatgtatatggactaaattt 42907880  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 3183612 - 3183715
Alignment:
Q  312 atactctctctagaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccac 411  Q
    |||||| ||||  |||||||||||| |||||||||||  ||| ||||| |||||| | ||||||  |||||| ||||| || ||||  |||||||| |||    
T  3183612 atactcactctgaaatgaaatataaacaaaaaagatagatgagaagttcatgcatgtagactaatattttaaccacatacattgaccgtttaactatcac 3183711  T
Q  412 tttt 415  Q
    ||||    
T  3183712 tttt 3183715  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Original strand, 16871711 - 16871770
Alignment:
Q  324 gaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaa 383  Q
    |||||||||||||||||  | | || |||||||||||||| || ||||||||||||||||    
T  16871711 gaatgaaatataagcaactatggtagttgaaaagttgatgtatgtggactaaatttttaa 16871770  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 31451154 - 31451059
Alignment:
Q  323 agaatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttgct 418  Q
    ||||||||||| || |||||||||||  ||||||||||||| || |||||||| |||| ||  | || || ||| |||| ||||||| ||||||||    
T  31451154 agaatgaaataaaaacaaaaaagataggtgaaaagttgatgtatgtggactaatttttcaacaagatacattgatttttcaactaccccttttgct 31451059  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 13341505 - 13341414
Alignment:
Q  325 aatgaaatataagcaaaaaagataattgaaaagttgatgcatatggactaaatttttaatcacatgcaatgactttttaactaccacttttg 416  Q
    ||||||||||||||||||| |||| |||||||  ||||| ||  ||||| ||||||||| ||||| || | || ||| |||||||| |||||    
T  13341505 aatgaaatataagcaaaaatgatagttgaaaaaatgatgtattcggacttaatttttaaccacatacattaacctttcaactaccatttttg 13341414  T

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Target: scaffold0633 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 5871 - 5821
Alignment:
Q  332 tataagcaaaaaagataattgaaaagttgatgcatatggactaaattttta 382  Q
    ||||||||||| || || |||||||||||||| || |||||||||||||||    
T  5871 tataagcaaaataggtagttgaaaagttgatgtatgtggactaaattttta 5821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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