View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6831_low_5 (Length: 404)
Name: NF6831_low_5
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 33 - 386
Target Start/End: Original strand, 51351131 - 51351468
Alignment:
| Q |
33 |
gattgaatcacaagtgatttaatgtgtgcttttactaatggaaactatgggaagtgattttgtgtctgttaaatgcgattttagcaattctgttgtctgc |
132 |
Q |
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| T |
51351131 |
gattgaatcacaagtgatttaatgtgtgcttttactaatggaaactatgggaagtgattttgtgtctgttaaatgcgattttagcaattctgttgtctgc |
51351230 |
T |
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| Q |
133 |
tgttgggttagtgttagattttttgaataggcaaatgttagtaattagtttgttaggaggaaggtgaaacattaacagaaaattgattgaacttggacgt |
232 |
Q |
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| T |
51351231 |
tgttgggttagtgttagattttttgaataggcaaatgttagtaattagtttgttaggaggaaggtgaaacgttaacagaaaattgattgaacttagacgt |
51351330 |
T |
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| Q |
233 |
agctcattctttgtccgaatctaaattattggactattccgaacttcggagactttgcccagttagtgttaaataaaattgattttagcttcaaactatg |
332 |
Q |
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| T |
51351331 |
agctcattctttgtccgaatctaaatta----------------ttcggagactttgcccaggtagtgttagataaaattgattttagcttcaaactatg |
51351414 |
T |
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| Q |
333 |
ctttaattaaatgtttggtnnnnnnntaatttacactaaaattttgtagtaaat |
386 |
Q |
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| T |
51351415 |
ctttaattaaatgtttggtaaaaaaataatttacactaaaattttgcagtaaat |
51351468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 40020274 - 40020304
Alignment:
| Q |
5 |
tatggagttgatataaagagtagttatagat |
35 |
Q |
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| T |
40020274 |
tatggagttgatataaagagtagttatagat |
40020304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 12038052 - 12038084
Alignment:
| Q |
159 |
ataggcaaatgttagtaattagtttgttaggag |
191 |
Q |
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| T |
12038052 |
ataggcaaatgttagtagttagtttgttaggag |
12038084 |
T |
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