View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6831_low_7 (Length: 399)
Name: NF6831_low_7
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 34898380 - 34897992
Alignment:
| Q |
1 |
tcttatagtgcattcagatttaatgttgtaattacatctccgttctattgcatcaactcgttttagtatcgtgtttttacttccttaacttttgtttgtt |
100 |
Q |
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| T |
34898380 |
tcttatagtgtattcagatttaatgttgtaattacatctccgttctattgcatcaacttgttttagtatcgtgtttttatttccttaacttttgtttgtt |
34898281 |
T |
|
| Q |
101 |
actagtgtagtgtttgtgtttccttctactcgcatcaaatctaaatgaatttgaataacttggaatctttaattttatagggatgcgcgtacaaaggacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34898280 |
actagtgtagtgtttgtgtttccttctactcgcatcaactctaaatgaatttgaataacttggaatctttaattttatagggatgcgcgtacaaaggacc |
34898181 |
T |
|
| Q |
201 |
ttctgaaagtatttaacatcgatggtcaagcagaaaatcgagttgacatgtcatccgtgcagcaggatcaagcagtagaagacgaaatgaaggtaaagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34898180 |
ttctgaaagtatttaacatcgatggtcaagcagaaaatcgagttgacatgtcatccgtgcagcaggatcaagcagtagaagacgaaatgaaggtgaagtt |
34898081 |
T |
|
| Q |
301 |
tgtttccaactcaaaaaaggaaaagtcccagagtactagctttctgcagaggtcacgtaatgcaatcatgggagctgcagatgatgtcc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34898080 |
tgtttccaactcaaaaaaggaaaagtcccagagtactagctttctgcagaggtcacgtaatgcaatcatgggagctgcagatgctgtcc |
34897992 |
T |
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