View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6831_low_8 (Length: 389)
Name: NF6831_low_8
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 112 - 360
Target Start/End: Complemental strand, 6581771 - 6581523
Alignment:
| Q |
112 |
acatataaaggtgtagcggcatagataatctgattttttattctattttagagtaaattccacatgtttcgtctatgtttttctgaatttattgtagcac |
211 |
Q |
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| T |
6581771 |
acatataaaggtgtagcggcatagataatctgattttttattttattttagagtaaattccacttgtttcgtctatgtttttctgaatttattgtagcac |
6581672 |
T |
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| Q |
212 |
aaacttgttttgtattagtttacatgtgagtttttgtcattgcaaagtacttctgtatttattacagttattgcttttcatttgtaggattgtacattaa |
311 |
Q |
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| T |
6581671 |
aaacttgttttgtattagtttacatgtgagtttttgtcattgcaaagcacttctgtatttattacagttattgcttttcatttgtaggattgtacattaa |
6581572 |
T |
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| Q |
312 |
gatcttgcgattttgacttggagcaaacctgtgtattgcattcgccaga |
360 |
Q |
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| T |
6581571 |
gatcttgcgattttgacttggagcaaacctgtgtattgcattcgccaga |
6581523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 6581870 - 6581833
Alignment:
| Q |
13 |
acatcattctcccagtttagagttcctttatttaaatg |
50 |
Q |
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| T |
6581870 |
acatcattctcccagtttagagttcctttatttaaatg |
6581833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 34238221 - 34238291
Alignment:
| Q |
293 |
ttgtaggattgtacattaagatcttgcgattttgacttggagcaaacctgtgtattgcattcgccagagaa |
363 |
Q |
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| T |
34238221 |
ttgtaggactgtacaatacgttcttgtgattttgacttggagcaaacttgtgttttgcattcacctgagaa |
34238291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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