View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6831_low_9 (Length: 310)
Name: NF6831_low_9
Description: NF6831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6831_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 289
Target Start/End: Complemental strand, 26384743 - 26384460
Alignment:
| Q |
6 |
tccaataatatgtacacaatctacaaagtttcataacaataccatcatggatgtatcacacacaacacatccataaggtaactgaataatacaaaatgca |
105 |
Q |
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| T |
26384743 |
tccaagaaaatgtacacaatctacaaagtttcataacaataccataatggatgtatcacacacaacacatccataaggtaactgaataatacaaaatgca |
26384644 |
T |
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| Q |
106 |
ccaacaacataataagcactaagaaaactaaacatagtcttcttatactttcagattctggctccaccaggaaaatgagaggcaagttgcaaacttgttt |
205 |
Q |
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| T |
26384643 |
ccaacaacataataagcactaagaaaactaaacatagtcttcttatactttcagattctggctccaccaggaaaatgagaggcaagttgcaaacttgttt |
26384544 |
T |
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| Q |
206 |
tcaaagcaaaaagttgcaaacttgtttccatcagatgaagctcagattctgaacacacattacacaacaacatatactagtagt |
289 |
Q |
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| T |
26384543 |
tcaaagcaaaaagttgcaaacttgtttccatcagatgaagctcagattctgaacacacattacacaacaacatatactagtagt |
26384460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 25777651 - 25777748
Alignment:
| Q |
107 |
caacaacataataagcactaagaaaactaaacatagtcttcttatactttcagattctggctccaccaggaaaatgagaggcaagttgcaaacttgttt |
205 |
Q |
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| T |
25777651 |
caacaacataataaacacagagaaaactaaacatagtcttc-tattctttcagattcttgctccaacggaaaaatgagaggcaagtaggaaacttgttt |
25777748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 26388440 - 26388373
Alignment:
| Q |
73 |
catccataaggtaactgaataatacaaaatgcaccaacaacataataagcactaagaaaactaaacatag |
142 |
Q |
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| T |
26388440 |
catccataaggtaaat-aataatacacaatgcaacaacaacataataaacactaag-aaactaaacatag |
26388373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 25777761 - 25777804
Alignment:
| Q |
245 |
gctcagattctgaacacacattacacaacaacatatactagtag |
288 |
Q |
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| T |
25777761 |
gctcagattatgaacacacattacataacaacatatactagtag |
25777804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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