View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6834_low_1 (Length: 414)
Name: NF6834_low_1
Description: NF6834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6834_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 182 - 391
Target Start/End: Original strand, 52250584 - 52250797
Alignment:
| Q |
182 |
tgacataacagaaaacataaa----cctatagaaaagtattgccagcacggccacgatgcaacaagtcatgagcaatattatccctagcttgaacagcag |
277 |
Q |
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| T |
52250584 |
tgacataacagaaaacataaaaaaacttataaaaaagtattgccaacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcag |
52250683 |
T |
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| Q |
278 |
caacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatg |
377 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
52250684 |
caacagatttcacaccattctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatg |
52250783 |
T |
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| Q |
378 |
caaaacacaacaag |
391 |
Q |
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| T |
52250784 |
caaaacacaacaag |
52250797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 52262300 - 52262439
Alignment:
| Q |
251 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatctt |
350 |
Q |
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| T |
52262300 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatcca-gatccatctt |
52262398 |
T |
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| Q |
351 |
ctcatttctcatctcacaaatattatgcaaaacacaacaag |
391 |
Q |
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| T |
52262399 |
ctcatttctcatctcacaaatattatgcaaaacacaacaag |
52262439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 52262179 - 52262277
Alignment:
| Q |
97 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataacagaaa |
195 |
Q |
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| T |
52262179 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataatagaaa |
52262277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52262120 - 52262173
Alignment:
| Q |
1 |
gtcgtgagttcaaatccgcgcccttgtaaactgatgtctccatcaaataaacta |
54 |
Q |
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| T |
52262120 |
gtcgtgagttcaaatccgcgcccttgtaaacagatgtctccatcaaataaacta |
52262173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 3698992 - 3698939
Alignment:
| Q |
338 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaag |
391 |
Q |
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| T |
3698992 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaag |
3698939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 3702680 - 3702627
Alignment:
| Q |
338 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaag |
391 |
Q |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
3702680 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaag |
3702627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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