View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6834_low_5 (Length: 284)

Name: NF6834_low_5
Description: NF6834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6834_low_5
NF6834_low_5
[»] chr1 (21 HSPs)
chr1 (13-204)||(26102209-26102400)
chr1 (13-139)||(27461017-27461143)
chr1 (14-135)||(31313705-31313826)
chr1 (13-110)||(11769859-11769956)
chr1 (18-136)||(52271084-52271202)
chr1 (32-153)||(34935158-34935278)
chr1 (13-85)||(18300893-18300965)
chr1 (34-112)||(25494352-25494430)
chr1 (16-82)||(25727802-25727868)
chr1 (16-82)||(25736210-25736276)
chr1 (21-135)||(26854160-26854274)
chr1 (13-110)||(30675637-30675733)
chr1 (34-139)||(31319448-31319552)
chr1 (22-110)||(25373907-25373995)
chr1 (13-99)||(15416850-15416936)
chr1 (159-194)||(26102434-26102469)
chr1 (14-56)||(34381864-34381906)
chr1 (16-102)||(50047330-50047416)
chr1 (33-126)||(25965222-25965315)
chr1 (38-154)||(13807540-13807655)
chr1 (33-85)||(15851111-15851163)
[»] chr6 (13 HSPs)
chr6 (18-164)||(26499658-26499804)
chr6 (30-164)||(9942960-9943095)
chr6 (28-145)||(26512609-26512726)
chr6 (28-145)||(26517725-26517842)
chr6 (13-96)||(9396486-9396569)
chr6 (13-139)||(16439610-16439736)
chr6 (27-127)||(32930294-32930393)
chr6 (13-165)||(12972194-12972347)
chr6 (17-83)||(30355473-30355539)
chr6 (16-85)||(33638395-33638464)
chr6 (31-91)||(24618053-24618113)
chr6 (34-174)||(14924220-14924359)
chr6 (33-103)||(23418982-23419052)
[»] chr5 (18 HSPs)
chr5 (28-139)||(17695299-17695410)
chr5 (13-110)||(11274195-11274292)
chr5 (34-110)||(11997758-11997834)
chr5 (13-139)||(26070626-26070752)
chr5 (31-169)||(24130798-24130937)
chr5 (14-115)||(7742730-7742831)
chr5 (13-110)||(16622542-16622638)
chr5 (13-110)||(26329935-26330031)
chr5 (22-146)||(18178263-18178386)
chr5 (13-112)||(16634199-16634298)
chr5 (13-135)||(25594533-25594654)
chr5 (14-91)||(20083620-20083697)
chr5 (13-110)||(30072268-30072365)
chr5 (31-110)||(18435291-18435370)
chr5 (13-112)||(18452675-18452774)
chr5 (15-85)||(19331664-19331734)
chr5 (38-139)||(19763722-19763823)
chr5 (13-85)||(17027680-17027751)
[»] chr4 (21 HSPs)
chr4 (21-168)||(31859707-31859855)
chr4 (61-164)||(4732956-4733059)
chr4 (13-111)||(10576605-10576703)
chr4 (32-138)||(33519201-33519307)
chr4 (13-103)||(46647347-46647437)
chr4 (13-135)||(5676352-5676474)
chr4 (13-102)||(7024092-7024181)
chr4 (43-127)||(13275590-13275674)
chr4 (16-127)||(17339662-17339774)
chr4 (13-161)||(26159908-26160053)
chr4 (22-138)||(32021955-32022069)
chr4 (13-82)||(15192356-15192424)
chr4 (14-115)||(17187326-17187427)
chr4 (13-102)||(34864169-34864257)
chr4 (38-107)||(53001046-53001115)
chr4 (32-116)||(21167901-21167985)
chr4 (64-139)||(16442094-16442169)
chr4 (13-83)||(19601951-19602020)
chr4 (36-174)||(21077408-21077546)
chr4 (13-82)||(13064578-13064647)
chr4 (31-115)||(30625037-30625120)
[»] chr7 (17 HSPs)
chr7 (13-110)||(29544672-29544769)
chr7 (12-117)||(21545685-21545790)
chr7 (28-97)||(14649663-14649732)
chr7 (13-117)||(22532503-22532607)
chr7 (27-83)||(12358655-12358711)
chr7 (12-136)||(18496716-18496840)
chr7 (61-164)||(8308847-8308950)
chr7 (38-139)||(10253577-10253677)
chr7 (13-136)||(1074605-1074728)
chr7 (33-139)||(2353077-2353183)
chr7 (16-85)||(30405749-30405818)
chr7 (14-110)||(9801740-9801835)
chr7 (14-85)||(5312676-5312747)
chr7 (64-110)||(25706357-25706403)
chr7 (13-78)||(9761313-9761377)
chr7 (13-110)||(20017106-20017202)
chr7 (13-110)||(20470675-20470772)
[»] chr8 (20 HSPs)
chr8 (61-174)||(27097602-27097716)
chr8 (21-169)||(5153918-5154067)
chr8 (13-110)||(16052142-16052239)
chr8 (13-136)||(32239440-32239563)
chr8 (13-85)||(11310146-11310217)
chr8 (13-177)||(28074665-28074829)
chr8 (13-203)||(35135193-35135383)
chr8 (33-138)||(13529943-13530047)
chr8 (33-138)||(13619482-13619586)
chr8 (14-83)||(28859131-28859200)
chr8 (94-181)||(12774638-12774725)
chr8 (13-85)||(28291991-28292063)
chr8 (15-98)||(6888070-6888153)
chr8 (13-136)||(24120376-24120499)
chr8 (68-167)||(28260097-28260196)
chr8 (13-85)||(14977002-14977071)
chr8 (28-85)||(12956648-12956705)
chr8 (16-81)||(29291925-29291990)
chr8 (13-85)||(13583410-13583482)
chr8 (13-85)||(24696734-24696806)
[»] chr3 (13 HSPs)
chr3 (13-85)||(19219101-19219173)
chr3 (13-138)||(23908108-23908233)
chr3 (16-103)||(25919344-25919430)
chr3 (14-85)||(28422606-28422676)
chr3 (14-136)||(10341940-10342062)
chr3 (13-99)||(16970614-16970700)
chr3 (15-112)||(19263767-19263867)
chr3 (13-127)||(21828981-21829095)
chr3 (13-135)||(26418872-26418994)
chr3 (13-137)||(33577886-33578004)
chr3 (61-127)||(19542972-19543038)
chr3 (75-164)||(21653561-21653650)
chr3 (94-169)||(11475085-11475161)
[»] chr2 (14 HSPs)
chr2 (21-116)||(17152314-17152409)
chr2 (13-165)||(24047534-24047686)
chr2 (13-176)||(17862562-17862726)
chr2 (32-174)||(18818873-18819015)
chr2 (13-107)||(21505007-21505101)
chr2 (30-85)||(17884533-17884588)
chr2 (13-136)||(27417102-27417225)
chr2 (13-198)||(18236079-18236265)
chr2 (13-138)||(39730599-39730724)
chr2 (13-120)||(21848930-21849036)
chr2 (27-102)||(31262163-31262238)
chr2 (13-146)||(17414993-17415125)
chr2 (13-85)||(1732703-1732775)
chr2 (36-112)||(31274131-31274207)
[»] scaffold0282 (1 HSPs)
scaffold0282 (13-110)||(22479-22575)
[»] scaffold0188 (1 HSPs)
scaffold0188 (13-110)||(26820-26917)
[»] scaffold0171 (2 HSPs)
scaffold0171 (13-85)||(21550-21622)
scaffold0171 (13-85)||(6348-6419)
[»] scaffold0011 (1 HSPs)
scaffold0011 (13-136)||(228026-228148)
[»] scaffold0386 (1 HSPs)
scaffold0386 (28-136)||(11638-11746)
[»] scaffold0190 (1 HSPs)
scaffold0190 (38-146)||(11528-11635)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 26102209 - 26102400
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26102209 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgatttttagaaggtttttgaagacaatacaagttgaggaaaattcatctcaagtttc 26102308  T
Q  113 aaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaaattcacactagagttgttgtctcatgctcccctgcgcatgagt 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26102309 aaggaatttcaagactgaagaacgctcagaaaagaacgaaaactgcaaaattcacactagagttgttgcctcatgctcccctgcgcatgagt 26102400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 27461143 - 27461017
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| |||| ||||||||||| |||||||||||||  | ||| ||||||||||||||||||||| |||  |||| ||||||| |||||| |    
T  27461143 gacatcacatgaaagatcgaggatatgaagtatgaagatcaatggttcttaaaaggtttttgaagacaatacaagtttgggaatattcatcacaagttcc 27461044  T
Q  113 aaggaattccaagactgaagaacgctc 139  Q
    |||| ||| ||||||  ||||||||||    
T  27461043 aaggcatttcaagacgaaagaacgctc 27461017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31313705 - 31313826
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttca 113  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||  | |||||| |||  ||||| ||    
T  31313705 acatcacgtgaaggattaagaatatgaagaatgaagatcaatgattcttataaggtttttgaagacaatacaagttaggaaaaattaatcctaagttcca 31313804  T
Q  114 aggaattccaagactgaagaac 135  Q
    ||| ||| |||||| |||||||    
T  31313805 aggcatttcaagacggaagaac 31313826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 11769956 - 11769859
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| ||||||||||| |||||||||| |||||| |||||  | |||||||||||||||||||||||||   ||| |||||||||| |||||||    
T  11769956 gacatcacatgaatgatcaaagatatgaagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagtt 11769859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 52271202 - 52271084
Alignment:
Q  18 cacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaagga 117  Q
    |||||||| |||| |||||||||||| ||||| ||||||    ||||||||| |||||||||||||||   ||| |||||||||| |||| || ||||||    
T  52271202 cacgtgaaggatcgaggatatgaagattgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaaattccaagga 52271103  T
Q  118 attccaagactgaagaacg 136  Q
    ||| |||||| ||||||||    
T  52271102 attgcaagacggaagaacg 52271084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 34935278 - 34935158
Alignment:
Q  32 aggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaa 131  Q
    ||||||||||||||  |||||||||  | ||| |||||||||||||| |||||| |||| |||||||||||| ||||||  |||| ||| |||||| ||     
T  34935278 aggatatgaagaatagagatcaatgt-tcttataaggtttttgaagataatacaagttggggaaaattcatcccaagttctaaggcatttcaagacggat 34935180  T
Q  132 gaacgctcagaaaagaacgaaa 153  Q
    |||| |||  ||||||||||||    
T  34935179 gaacactcgaaaaagaacgaaa 34935158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 18300965 - 18300893
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||||||||||| ||||||||||||||||| | || | |||||  | |||||||||||||||||||||||||    
T  18300965 gacatcacgtgaaggatcaaggatatgaagattaaataccaatggttcttagaaggtttttgaagacaataca 18300893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 25494430 - 25494352
Alignment:
Q  34 gatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||||| |||||| |||||  | |||||||||||||||||||||||||   ||| |||||||||| |||| ||||    
T  25494430 gatatgaagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaaatttc 25494352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 25727868 - 25727802
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaat 82  Q
    ||||| |||| ||| ||||||||||||| ||||||||||||  | || |||||||||||||||||||    
T  25727868 atcacatgaaggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaat 25727802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 25736276 - 25736210
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaat 82  Q
    ||||| |||| ||| ||||||||||||| ||||||||||||  | || |||||||||||||||||||    
T  25736276 atcacatgaaggattaaggatatgaagattgaagatcaatggttcttggaaggtttttgaagacaat 25736210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 26854274 - 26854160
Alignment:
Q  21 gtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaatt 120  Q
    ||||| |||||| |||||||||| ||||| ||||||  | ||||||| | |||||||||||||||   ||| |||||||||| | ||||| ||||| |||    
T  26854274 gtgaaggatcaatgatatgaagattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttccaaggcatt 26854175  T
Q  121 ccaagactgaagaac 135  Q
     |||||  |||||||    
T  26854174 gcaagatggaagaac 26854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 30675637 - 30675733
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    ||||||| ||||| ||||||| || |||||| |||| |||||||  | |||||||||||||||||| ||||||   ||| |||||||||| |||||||    
T  30675637 gacatcatgtgaaggatcaagaatgtgaagattgaa-atcaatggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagtt 30675733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 31319552 - 31319448
Alignment:
Q  34 gatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaaga 133  Q
    |||||||| ||||||||||||||  | ||||||| |||||||||||||| || || | || ||||| ||| |||||||||||| ||| |||||  ||| |    
T  31319552 gatatgaataatgaagatcaatggttcttagaagttttttgaagacaatgcaagtcg-gggaaatttatcccaagtttcaaggcatttcaagatggaaaa 31319454  T
Q  134 acgctc 139  Q
    ||||||    
T  31319453 acgctc 31319448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 25373907 - 25373995
Alignment:
Q  22 tgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||| |||| |||||||||||| | |||| |||||  | |||||||||| || ||||||||||| | ||| |||||||||| |||||||    
T  25373907 tgaaggatccaggatatgaagattaaagaccaatggttcttagaaggttgtttaagacaatacaagatgaagaaaattcatttcaagtt 25373995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 15416936 - 15416850
Alignment:
Q  13 gacatcacgtgaatgatcaagg-atatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaatt 99  Q
    |||| ||| |||| |||||||| ||||||||||||||||||||||  | ||| ||||||||| |||||||| || |||| ||||||||    
T  15416936 gacaccacatgaaggatcaagggatatgaagaatgaagatcaatggttcttataaggtttttaaagacaatgcaagttg-ggaaaatt 15416850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 26102434 - 26102469
Alignment:
Q  159 aaaattcacactagagttgttgtctcatgctcccct 194  Q
    |||||||||||||||||||||| |||||||||||||    
T  26102434 aaaattcacactagagttgttgcctcatgctcccct 26102469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 34381864 - 34381906
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatg 56  Q
    |||||||||||| ||||||||||||||||  ||||||||||||    
T  34381864 acatcacgtgaaagatcaaggatatgaagtttgaagatcaatg 34381906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 50047330 - 50047416
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcat 102  Q
    |||||||||| |||||||| |||||| | ||||||||||||    ||| |||||| ||||||||||||||   ||| ||||||||||    
T  50047330 atcacgtgaaggatcaagggtatgaatattgaagatcaatggtacttaaaaggttattgaagacaatacaaaatgaagaaaattcat 50047416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 25965315 - 25965222
Alignment:
Q  33 ggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaaga 126  Q
    |||||||||||||| |||||||||||| ||  ||   ||| |||||||||||| |||   ||||||||||| |||||| ||||| ||| |||||    
T  25965315 ggatatgaagaatggagatcaatgactcttcaaaaaatttagaagacaatacaagttagagaaaattcatcccaagttccaaggcatttcaaga 25965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 13807655 - 13807540
Alignment:
Q  38 tgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgc 137  Q
    ||||||||||||||  |||  | ||||||| |||||||||| |||||| |||| |||||| |||||  ||||||||||| |||  |||||   |||||||    
T  13807655 tgaagaatgaagattgatgcttcttagaagatttttgaagaaaatacaagttg-ggaaaaatcatcctaagtttcaaggcattttaagacaagagaacgc 13807557  T
Q  138 tcagaaaagaacgaaaa 154  Q
    ||  ||||| |||||||    
T  13807556 tcgaaaaaggacgaaaa 13807540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 15851163 - 15851111
Alignment:
Q  33 ggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||| ||||||||| ||||||   |||||||||||||||||| ||||||    
T  15851163 ggatatgatgaatgaagaccaatgatacttagaaggtttttgaagaaaataca 15851111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 26499804 - 26499658
Alignment:
Q  18 cacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaagga 117  Q
    |||||||| |||| |||||||||||| ||||||||||||  | |||||||||||||||||||||||||   | | |||||||||| |||||||||||||     
T  26499804 cacgtgaaagatcgaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtttcaaggc 26499705  T
Q  118 attccaagactgaagaacgctcagaaaagaacgaaaactgcaaaatt 164  Q
    ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  26499704 attgcaagacggaacaacgctcgaaaaagaacgaaaactgcaaaatt 26499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 9943095 - 9942960
Alignment:
Q  30 caaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac-t 128  Q
    ||||||||||||||||||| ||||||| || ||| ||||||||| ||||||||  | |||| ||||||||||||||||||| ||||  ||| ||||||      
T  9943095 caaggatatgaagaatgaaaatcaatggctcttataaggtttttaaagacaatgtaagttggggaaaattcatctcaagttccaagacatttcaagacaa 9942996  T
Q  129 gaagaacgctcagaaaagaacgaaaactgcaaaatt 164  Q
    ||| || ||||  ||| | |||||||||||||||||    
T  9942995 gaaaaatgctcgaaaagggacgaaaactgcaaaatt 9942960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 26512726 - 26512609
Alignment:
Q  28 atcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac 127  Q
    ||||||||||||||| |||||||||||||  | ||| ||||| | |||| |||||||| | |||  ||||||||||||||||||||||| ||| |||||     
T  26512726 atcaaggatatgaaggatgaagatcaatggttcttaaaaggtctgtgaacacaatacaagatgataaaaattcatctcaagtttcaaggcatttcaagaa 26512627  T
Q  128 tgaagaacgctcagaaaa 145  Q
     ||| ||||||| |||||    
T  26512626 ggaaaaacgctcggaaaa 26512609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 26517842 - 26517725
Alignment:
Q  28 atcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac 127  Q
    ||||||||||||||| |||||||||||||  | ||| ||||| | |||| |||||||| | |||  ||||||||||||||||||||||| ||| |||||     
T  26517842 atcaaggatatgaaggatgaagatcaatggttcttaaaaggtctgtgaacacaatacaagatgataaaaattcatctcaagtttcaaggcatttcaagaa 26517743  T
Q  128 tgaagaacgctcagaaaa 145  Q
     ||| ||||||| |||||    
T  26517742 ggaaaaacgctcggaaaa 26517725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 9396569 - 9396486
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaa 96  Q
    ||||||||||||| ||||||||| | |||||||||||||||| || | ||||||  |||||||||||||||||  |||||||||    
T  9396569 gacatcacgtgaaggatcaaggacaagaagaatgaagatcaacgattcttagaaattttttgaagacaatacaatttgaggaaa 9396486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 16439610 - 16439736
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||  |||| ||||| ||||||||||||||||||||||||  | |||||| | ||||||||| |||||| |||  |||||||||||| |||| | |    
T  16439610 gacatcagatgaaagatcagggatatgaagaatgaagatcaatggttcttagaatggttttgaagaaaatacaagttcgggaaaattcatcgcaagatcc 16439709  T
Q  113 aaggaattccaagactgaagaacgctc 139  Q
    |||  |||  ||||| |||||||||||    
T  16439710 aagacattttaagacggaagaacgctc 16439736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 32930393 - 32930294
Alignment:
Q  27 gatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaaga 126  Q
    |||||| ||||||||| ||||| |||||||| | || |||||||||| ||||||||||| |||| |||||||| ||| |||||| ||||| ||| |||||    
T  32930393 gatcaaagatatgaaggatgaaaatcaatgattcttggaaggtttttaaagacaatacaagttg-ggaaaattaatcacaagttccaaggcatttcaaga 32930295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 12972347 - 12972194
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||| ||||||| |||| | |||||||||| ||||||||||||  | || |||||| ||| || |||| | || || | || ||||||| | || ||||    
T  12972347 gacataacgtgaaagatcgatgatatgaagattgaagatcaatggttctttgaaggtattttaatacaacagacattaaagacaattcatttaaactttc 12972248  T
Q  113 aaggaattccaagactgaagaacgctcagaaaag-aacgaaaactgcaaaattc 165  Q
    |||| ||| |||||| |||||| ||||  ||||| |||||||||||||||||||    
T  12972247 aaggcattgcaagacggaagaatgctcgaaaaagtaacgaaaactgcaaaattc 12972194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 30355473 - 30355539
Alignment:
Q  17 tcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaata 83  Q
    |||| |||| |||| |||||||||||| |||||||||||   | |||||||||||||||||||||||    
T  30355473 tcacatgaaggatcgaggatatgaagattgaagatcaatcgttcttagaaggtttttgaagacaata 30355539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 33638464 - 33638395
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||| ||||| ||||||||||||||||| ||||||||||||  | ||| ||||| |||||||| ||||||    
T  33638464 atcaagtgaaggatcaaggatatgaagattgaagatcaatggttcttataaggtctttgaagataataca 33638395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 24618053 - 24618113
Alignment:
Q  31 aaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttga 91  Q
    ||||||||||||| ||||||||||||| | ||||||| | ||| ||||||||||| |||||    
T  24618053 aaggatatgaagattgaagatcaatgattcttagaagatctttaaagacaatacaagttga 24618113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 14924359 - 14924220
Alignment:
Q  34 gatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaaga 133  Q
    |||||||| | ||||||||||||  |  | ||| |||||||||||||||||| | |||  ||||||||| ||| |||  |||| ||| |||||| |||||    
T  14924359 gatatgaaaattgaagatcaatggttcatggaatgtttttgaagacaatacaagatga--aaaattcatttcaggttcgaaggcattgcaagacggaaga 14924262  T
Q  134 acgctcagaaa-agaacgaaaactgcaaaattcacactagag 174  Q
    ||| ||| ||  || |||||||||||||||||| ||| ||||    
T  14924261 acgatcaaaattaggacgaaaactgcaaaattcccaccagag 14924220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 23419052 - 23418982
Alignment:
Q  33 ggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatc 103  Q
    |||| ||||||||||| |||||||     |||||||||||||||| ||||||| ||||| |||||||||||    
T  23419052 ggatttgaagaatgaatatcaatgttacgtagaaggtttttgaagtcaatacaagttgaagaaaattcatc 23418982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 17695410 - 17695299
Alignment:
Q  28 atcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac 127  Q
    ||||||| |||||| ||||||||||||||  | ||||||||||||||||||||||||| |||| ||||||||||||  ||||| ||||| ||| ||||||    
T  17695410 atcaaggttatgaataatgaagatcaatggttattagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaagac 17695311  T
Q  128 tgaagaacgctc 139  Q
     |||||||||||    
T  17695310 cgaagaacgctc 17695299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 11274292 - 11274195
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| |||| ||||||||||||||||| |||||| |||||  | ||||||||| ||||||||||||||| | ||| |||| ||||| |||||||    
T  11274292 gacatcacatgaaggatcaaggatatgaagattgaagaccaatggttcttagaaggtctttgaagacaatacaagatgatgaaatttcatttcaagtt 11274195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 11997834 - 11997758
Alignment:
Q  34 gatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||   |||||||||| ||||||    
T  11997834 gatatgaagaatgaagatcaatgatttttagaaggtttttaaagataatacaagttggaaaaaattcatcccaagtt 11997758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 26070626 - 26070752
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| ||||||||||||||||| |||||||| |||  |  || |||||||||||||||||| || |||   |||||||||  ||||||| |    
T  26070626 gacatcacatgaaggatcaaggatatgaagattgaagatctatggttcgtataaggtttttgaagacaatgcaagttagagaaaattcagttcaagttcc 26070725  T
Q  113 aaggaattccaagactgaagaacgctc 139  Q
    |||| ||| |||||| |||||| ||||    
T  26070726 aaggcatttcaagacggaagaaggctc 26070752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 169
Target Start/End: Original strand, 24130798 - 24130937
Alignment:
Q  31 aaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactga 130  Q
    ||||||||||||||| || |||||||  | |||||||||||||||| ||||||||  ||| |||||||||||| |||||| || || ||| |||||   |    
T  24130798 aaggatatgaagaataaatatcaatggatcttagaaggtttttgaatacaatacaaattggggaaaattcatcccaagttccagggcatttcaagagcaa 24130897  T
Q  131 agaacgctcagaaaa--gaacgaaaactgcaaaattcacac 169  Q
    |||||||| ||||||  | ||||||| ||||||||| ||||    
T  24130898 agaacgct-agaaaaagggacgaaaaatgcaaaatttacac 24130937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7742831 - 7742730
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttca 113  Q
    ||||||||||||  ||| | |||||||||| ||||||||||||  | ||||||||| |||||||||||||||   ||| ||||| || | ||||||||||    
T  7742831 acatcacgtgaagaatcgaagatatgaagactgaagatcaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaaatcgtttcaagtttca 7742732  T
Q  114 ag 115  Q
    ||    
T  7742731 ag 7742730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 16622638 - 16622542
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| |||| ||| ||||||||||||| |||||| || ||  | |||||||||||| ||||||||||||  |||| |||||||||| |||||||    
T  16622638 gacatcacatgaaggattaaggatatgaagattgaagaccagtggttcttagaaggtttt-gaagacaatacaaattgaagaaaattcatttcaagtt 16622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 26330031 - 26329935
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| |||| ||||||||||||||||| ||||| ||||||    ||||||||||||| |||||||||||   ||| |||||||||| |||||||    
T  26330031 gacatcacatgaaggatcaaggatatgaagattgaag-tcaatggtccttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagtt 26329935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 18178263 - 18178386
Alignment:
Q  22 tgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattc 121  Q
    |||| |||| |||||||||||| |||||| ||||   | || |||||| |||||||| ||||||  ||||  ||||||||||||||||| |||||  ||     
T  18178263 tgaaggatcgaggatatgaagattgaagaccaattgttcttggaaggtctttgaagataatacaaattgaataaaattcatctcaagttccaagg-cttt 18178361  T
Q  122 caagactgaagaacgctcagaaaag 146  Q
    |||||| |||||||||||| |||||    
T  18178362 caagacggaagaacgctcaaaaaag 18178386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 16634199 - 16634298
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||||||||| || |||  ||||||||  |||||| |||||  | |||||||||||||||||| |||||| | |||  ||||||||| |||||||||    
T  16634199 gacatcacgtgaaggaacaataatatgaagtttgaagaccaatggttcttagaaggtttttgaagaaaatacaagatgaaaaaaattcatttcaagtttc 16634298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 25594654 - 25594533
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| ||||||||||||||||| |||| |||||||  | |||||||||||||| ||| ||| ||   ||| |||||||||| ||||||| |    
T  25594654 gacatcacatgaacgatcaaggatatgaagattgaatatcaatggatattagaaggtttttgtagataatgcaaagtgaagaaaattcat-tcaagttcc 25594556  T
Q  113 aaggaattccaagactgaagaac 135  Q
     |||| || | |||| |||||||    
T  25594555 taggagtttccagacggaagaac 25594533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 20083620 - 20083697
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttga 91  Q
    |||||||||||| ||| ||||||||||| ||||||| ||||||  ||||| || || |||||| |||||||| |||||    
T  20083620 acatcacgtgaaagattaaggatatgaaaaatgaagttcaatggtttttataaagtatttgaaaacaatacaggttga 20083697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 30072268 - 30072365
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| |||| |||||| |||||||||| ||||||| ||||  | ||| ||||||||| |||||||||||   ||| |||| ||||| |||||||    
T  30072268 gacatcacatgaaggatcaaagatatgaagattgaagattaatggttcttaaaaggtttttaaagacaatacaaagtgaagaaatttcatttcaagtt 30072365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 18435370 - 18435291
Alignment:
Q  31 aaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    ||||||||||| ||||| |||| |||  ||  | ||||||||||||||||||||| |||||  |||||||||| ||||||    
T  18435370 aaggatatgaaaaatgacgatcgatggtttacataaggtttttgaagacaatacaagttgaaaaaaattcatcccaagtt 18435291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 18452774 - 18452675
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||  |||||| |||||||| | ||||||||||||  | ||| ||||||||| || ||||||||   ||| |||||||||| |||||||||    
T  18452774 gacatcacatgagggatcaaagatatgaaaattgaagatcaatggttcttataaggttttttaaaacaatacaaagtgaagaaaattcatttcaagtttc 18452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 19331664 - 19331734
Alignment:
Q  15 catcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||| ||||| |||| |||||||||||| ||||  ||||||| |||||||||   |||||||||||||||    
T  19331664 catcaagtgaaggatcgaggatatgaagattgaaattcaatgatttttagaagacatttgaagacaataca 19331734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 19763823 - 19763722
Alignment:
Q  38 tgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgc 137  Q
    |||||| |||||||||| |  | |||||||||||||||||| ||||||   ||| |||||||||| ||||||| ||| | |||  ||||  |||||||||    
T  19763823 tgaagattgaagatcaagggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttccaaaggattgaaagatggaagaacgc 19763724  T
Q  138 tc 139  Q
    ||    
T  19763723 tc 19763722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 17027680 - 17027751
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||||||||| | |||||| |||||||||| ||||| | ||||  | |||||||||| ||||||||||||||    
T  17027680 gacatcacgtgcaagatcaaagatatgaagattgaag-ttaatgcttcttagaaggttcttgaagacaataca 17027751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 31859855 - 31859707
Alignment:
Q  21 gtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaatt 120  Q
    ||||| |||| |||||||||| | ||||||||||||  | ||||||||| |||||||||||||||   ||| ||||||| || ||||||| ||||| |||    
T  31859855 gtgaaggatcgaggatatgaatattgaagatcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttccaaggcatt 31859756  T
Q  121 ccaagactgaagaacgc-tcagaaaagaacgaaaactgcaaaattcaca 168  Q
     |||||| ||||||||| | | ||||| |||||||||||||||||||||    
T  31859755 tcaagacggaagaacgcgtgaaaaaaggacgaaaactgcaaaattcaca 31859707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 4732956 - 4733059
Alignment:
Q  61 ttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaa 160  Q
    ||||||||| ||| ||||||||||| ||||| |||||||||| |||| |||||||| ||| |||||| |||||||||||| ||| |||| ||||||| ||    
T  4732956 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaaatttcaaggcatttcaagacagaagaacgctcaaaaaggaacaaaaactgtaa 4733055  T
Q  161 aatt 164  Q
    ||||    
T  4733056 aatt 4733059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 10576605 - 10576703
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    ||||||| ||||| |||| |||||||||||||| |||| | |||| ||||||||||||||||||| ||| ||| |||  |||||||||||  |||||||    
T  10576605 gacatcatgtgaaggatcgaggatatgaagaataaagaactatgatttttagaaggtttttgaaggcaacacaagttagggaaaattcattccaagttt 10576703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 33519201 - 33519307
Alignment:
Q  32 aggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaa 131  Q
    ||||||||| || |||||||||||   | ||||||||| ||||||||||||||| ||||| |||||||||| |||| || ||||| ||| | |||| |||    
T  33519201 aggatatgacgattgaagatcaatcgttcttagaaggtctttgaagacaatacaagttgaagaaaattcatttcaaattccaaggcatttccagacagaa 33519300  T
Q  132 gaacgct 138  Q
    |||||||    
T  33519301 gaacgct 33519307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 46647347 - 46647437
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatc 103  Q
    ||||||||||||  |||||| |||||||| ||||||||||||||  | ||| ||||||||| |||| |||||| |||| ||||||||||||    
T  46647347 gacatcacgtgagggatcaaagatatgaaaaatgaagatcaatggttcttaaaaggtttttaaagataatacaagttggggaaaattcatc 46647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 5676352 - 5676474
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| |||||||||||| |||  |||| |  ||||| | ||||||||||||||||||||||||| | ||| |||||||||| || |||| |    
T  5676352 gacatcacatgaaggatcaaggatattaagtttgaatacaaatgattcttagaaggtttttgaagacaatacaagatgaagaaaattcatttcgagttac 5676451  T
Q  113 aaggaattccaagactgaagaac 135  Q
     |||| || | |||| |||||||    
T  5676452 taggagtttctagacggaagaac 5676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 7024181 - 7024092
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcat 102  Q
    ||||||||||||| |||||| |||||||||| |||||| |||||  | ||||||| || ||||||| |||||| | ||| ||||||||||    
T  7024181 gacatcacgtgaaggatcaaagatatgaagattgaagaccaatggttcttagaagattcttgaagataatacaagatgaagaaaattcat 7024092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 13275674 - 13275590
Alignment:
Q  43 aatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac 127  Q
    ||||||||||||||  | || |||| ||||||||||||||||| |||| |||||||||||| | |||| ||||| ||| ||||||    
T  13275674 aatgaagatcaatggttctttgaagttttttgaagacaatacaagttggggaaaattcatccctagttacaaggcatttcaagac 13275590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 17339774 - 17339662
Alignment:
Q  16 atcacgtgaatgatcaag-gatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaa 114  Q
    ||||| |||| ||||||| |||||| ||||||||||||| ||| | ||| ||| |||||||||||||| || |||| | |||||||||| ||| ||| ||    
T  17339774 atcacatgaaggatcaagagatatggagaatgaagatcagtgattcttaaaagatttttgaagacaattcaagttgtgtaaaattcatcccaaattttaa 17339675  T
Q  115 ggaattccaagac 127  Q
    || ||| ||||||    
T  17339674 ggcatttcaagac 17339662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 26159908 - 26160053
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||| ||||| |||  |||||||||||| ||||||||||||  | ||| ||||| ||||||  ||| | | ||||| |||||||||| ||||||| |    
T  26159908 gacatcatgtgaaggattcaggatatgaagattgaagatcaatggttcttataaggtctttgaaatcaa-ataagttgaagaaaattcatttcaagttcc 26160006  T
Q  113 aaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaa 161  Q
    |||| ||| |||||| ||||||||||| |||| | || |||||||||||    
T  26160007 aagg-atttcaagacggaagaacgctc-gaaagggacaaaaactgcaaa 26160053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 32021955 - 32022069
Alignment:
Q  22 tgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattc 121  Q
    |||| ||||||| ||||||||||||||||||||||  |   | |||||||| |||||||||||| |||| || ||||||||| ||| |||||||| |||     
T  32021955 tgaaggatcaagtatatgaagaatgaagatcaatggttccaaaaaggtttt-gaagacaatacaagttg-gggaaattcatcccaaatttcaaggcattt 32022052  T
Q  122 caagactgaagaacgct 138  Q
    |||||  ||||||||||    
T  32022053 caagatggaagaacgct 32022069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 15192356 - 15192424
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaat 82  Q
    ||||||||||||| ||||||||||||||| | |||||| |||||  | |||||||||| |||||||||||    
T  15192356 gacatcacgtgaaggatcaaggatatgaa-attgaagaccaatggttcttagaaggttgttgaagacaat 15192424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 17187326 - 17187427
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttca 113  Q
    |||||| |||||||||  |||||||||||| ||||| ||| ||  | ||||||| | |||||||||||||||   | | |||||||||| ||||||||||    
T  17187326 acatcaagtgaatgattgaggatatgaagattgaagttcagtggttcttagaagttatttgaagacaatacaaagtaaagaaaattcatttcaagtttca 17187425  T
Q  114 ag 115  Q
    ||    
T  17187426 ag 17187427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 34864257 - 34864169
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcat 102  Q
    ||||||||||||| |||||| |||||| ||| ||||| ||||||  | |||||||||||||| ||||||||||   ||| ||||||||||    
T  34864257 gacatcacgtgaaggatcaaagatatggagattgaag-tcaatggttcttagaaggtttttgtagacaatacaaaatgaagaaaattcat 34864169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 53001115 - 53001046
Alignment:
Q  38 tgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaa 107  Q
    ||||||||| ||||||||||   |||||||| |||||||||||||||  |||||| |||||| |||||||    
T  53001115 tgaagaatggagatcaatgatacttagaaggcttttgaagacaatactagttgagaaaaattaatctcaa 53001046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 21167901 - 21167985
Alignment:
Q  32 aggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaagg 116  Q
    ||||| ||||||||||| |||||||  | ||||||  ||||| || |||| ||| |||| |||||||||||| ||||||||||||    
T  21167901 aggatgtgaagaatgaaaatcaatgcttcttagaatatttttaaatacaagacaagttggggaaaattcatcccaagtttcaagg 21167985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 16442169 - 16442094
Alignment:
Q  64 gaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgctc 139  Q
    ||||||||||||||||||||||  ||| || ||||| |||  ||||| |||| |||| |||||| |||||||||||    
T  16442169 gaaggtttttgaagacaatacaatttgggggaaatttatccaaagttccaagcaatttcaagacggaagaacgctc 16442094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 19601951 - 19602020
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaata 83  Q
    ||||||||||||| |||| ||||||||| || |||||| |||||  | ||| |||||||||||||||||||    
T  19601951 gacatcacgtgaaagatcgaggatatgatgattgaaga-caatggttcttaaaaggtttttgaagacaata 19602020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 21077408 - 21077546
Alignment:
Q  36 tatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaac 135  Q
    ||||| || |||| |||||||  | |||||||||  | ||||||||||||  ||||  ||||||||| ||||||| ||||| |||  ||||  ||||||     
T  21077408 tatgaggattgaatatcaatggttcttagaaggtaatcgaagacaatacaaattgaataaaattcatttcaagttccaaggcattgaaagatggaagaat 21077507  T
Q  136 gctcagaaaagaacgaaaactgcaaaattcacactagag 174  Q
     |||| ||| | |||||||||||||||||| ||| ||||    
T  21077508 actcaaaaaggtacgaaaactgcaaaattcgcacaagag 21077546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 13064578 - 13064647
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaat 82  Q
    ||||||||||||| ||||||||||| || || ||||| ||||||  | ||||| ||| ||||||||||||    
T  13064578 gacatcacgtgaaggatcaaggataagacgattgaagttcaatggttcttagagggtatttgaagacaat 13064647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 30625037 - 30625120
Alignment:
Q  31 aaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaag 115  Q
    |||||| |||||||||||||||||||    ||| || | ||||||||||| |||| | || |||||||||||| |||||||||||    
T  30625037 aaggatttgaagaatgaagatcaatgttacttaaaaagattttgaagacagtacaagctg-ggaaaattcatcccaagtttcaag 30625120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 29544672 - 29544769
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| |||| |||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||   ||| |||||||||| |||||||    
T  29544672 gacatcacatgaaggatcaaagatatgaagattgaagatcaatgattcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagtt 29544769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 21545790 - 21545685
Alignment:
Q  12 ggacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||  | |||||| || ||||||||||||| |   ||| |||||||||| ||||||||    
T  21545790 ggacatcacgtgaaggatcaaggatatgaagattgaagatcaatggttcttagaaagtatttgaagacaataaaaagtgaagaaaattcatttcaagttt 21545691  T
Q  112 caagga 117  Q
    | ||||    
T  21545690 ctagga 21545685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 14649663 - 14649732
Alignment:
Q  28 atcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaa 97  Q
    |||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||| |||| ||||||    
T  14649663 atcaaggatatgaataatgaagatcaatggttattagaaggtttttgaagacaatacaagttggggaaaa 14649732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 22532607 - 22532503
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||  |||| |||||| |||||||||| |||||||  | |||||| ||||||||||||||| || |||  ||||||||||||||||||| |    
T  22532607 gacatcacatgatggatcgaggatacgaagaatgaatatcaatggttcttagaaagtttttgaagacaatccaagttatggaaaattcatctcaagttcc 22532508  T
Q  113 aagga 117  Q
    |||||    
T  22532507 aagga 22532503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 12358711 - 12358655
Alignment:
Q  27 gatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaata 83  Q
    ||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||    
T  12358711 gatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaata 12358655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 18496716 - 18496840
Alignment:
Q  12 ggacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    |||||||  ||||| ||||||||||||||||| ||||||  ||||  | |||||| ||| ||||||| |||||| | ||| |||||||||| |||||||     
T  18496716 ggacatcgagtgaaggatcaaggatatgaagattgaagaataatggttcttagaatgttgttgaagaaaatacaagatgaagaaaattcatttcaagttc 18496815  T
Q  112 caaggaattccaagactgaagaacg 136  Q
    ||||| ||| ||||||  |||||||    
T  18496816 caaggcatttcaagacgtaagaacg 18496840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 8308950 - 8308847
Alignment:
Q  61 ttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaa 160  Q
    ||||||||| |||||||||||||||   | | ||| |||||| ||||||| ||||| ||| |||||| |||||||||||| ||| | | |||||||||||    
T  8308950 ttagaaggtctttgaagacaatacaaaataaagaagattcatatcaagttccaaggtattgcaagacggaagaacgctcaaaaagggaggaaaactgcaa 8308851  T
Q  161 aatt 164  Q
    ||||    
T  8308850 aatt 8308847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 10253677 - 10253577
Alignment:
Q  38 tgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgc 137  Q
    |||||| |||||||||||||   ||| | ||||||||||||||||||| |||| || ||||||||| ||||| |||||||||  ||||||  ||||||||    
T  10253677 tgaagattgaagatcaatgatacttatagggtttttgaagacaatacaagttg-gggaaattcatcccaagtctcaaggaatatcaagaccaaagaacgc 10253579  T
Q  138 tc 139  Q
    ||    
T  10253578 tc 10253577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 1074605 - 1074728
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||| || || ||||||||||||||| | |||||| |||||  | ||| |||||| |||||||||||||| | ||| ||||| | || ||||||| |    
T  1074605 gacatcaagtaaaggatcaaggatatgaaaattgaagaccaatggttcttaaaaggttgttgaagacaatacaagatgaagaaaagtaatttcaagttcc 1074704  T
Q  113 aaggaattccaagactgaagaacg 136  Q
    |||  ||| |||||| ||||||||    
T  1074705 aagacatttcaagacggaagaacg 1074728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 2353183 - 2353077
Alignment:
Q  33 ggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaag 132  Q
    |||| |||| ||||||||||||||  | ||||||||| |||  |||||||||| | |||| |||||||||||||||||  ||||  || |||||| ||||    
T  2353183 ggatgtgaaaaatgaagatcaatggttattagaaggtgtttatagacaatacatgatgagaaaaattcatctcaagttctaaggcttttcaagacggaag 2353084  T
Q  133 aacgctc 139  Q
    | |||||    
T  2353083 atcgctc 2353077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 30405749 - 30405818
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||| ||||| |||| |||||||||||| ||||| ||||||| | ||||||||| |||||| ||||||||    
T  30405749 atcatgtgaaggatcgaggatatgaagattgaagttcaatgattcttagaaggtatttgaatacaataca 30405818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 9801835 - 9801740
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||| ||||| ||||||||||||||||| ||||| ||||||  | ||| ||||||||| |||| ||||||   ||||||||||| || |||||||    
T  9801835 acatcatgtgaaggatcaaggatatgaagattgaag-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaggaaaatttatttcaagtt 9801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 5312747 - 5312676
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||| ||||| |||||||||||||| || |||| || ||||  | ||||||| |||||||||||||||||    
T  5312747 acatcaagtgaaggatcaaggatatgaggattgaacataaatggttcttagaagatttttgaagacaataca 5312676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 25706357 - 25706403
Alignment:
Q  64 gaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||    
T  25706357 gaaggtttttgaagacaatataagttggggaaaattcatcccaagtt 25706403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 9761377 - 9761313
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaaga 78  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||  | ||| ||||||||| ||||    
T  9761377 gacatcacgtgaaggatcaaggatatgaagattgaag-tcaatggttcttaaaaggtttttaaaga 9761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 20017106 - 20017202
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    ||||||| ||||| ||| ||| ||||||||| ||||  ||||||  | |||||||||| ||||||||||||||   ||| |||||||||| |||||||    
T  20017106 gacatcatgtgaaggattaagcatatgaagattgaac-tcaatggttcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagtt 20017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 20470772 - 20470675
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||| | |||| |||||||||| |||| | ||||| ||||||  | |||||||||| ||||||||||||||   ||| ||||||| || |||||||    
T  20470772 gacatcgcatgaacgatcaaggatgtgaatattgaagttcaatggttcttagaaggttcttgaagacaatacaaaatgaagaaaattgatttcaagtt 20470675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 27097716 - 27097602
Alignment:
Q  61 ttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaaga-acgaaaactgca 159  Q
    ||||||||| ||||||||||||||| ||||| |||||||||  ||||||| ||||| ||| |||||| ||||||| |||| |||||| | |||||| |||    
T  27097716 ttagaaggtctttgaagacaatacaagttgaagaaaattcaattcaagttccaaggcattgcaagacggaagaacactcaaaaaagagatgaaaaccgca 27097617  T
Q  160 aaattcacactagag 174  Q
    |||||| ||||||||    
T  27097616 aaattcgcactagag 27097602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 5153918 - 5154067
Alignment:
Q  21 gtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaatt 120  Q
    ||||| |||| |||||||||||| ||||||||||||| | || |||||||||||||||||||| |   |||  ||||||||| ||||||| ||||  |||    
T  5153918 gtgaaggatcgaggatatgaagattgaagatcaatgattattggaaggtttttgaagacaatataacatgaataaaattcatttcaagttccaagacatt 5154017  T
Q  121 ccaagactgaagaacgctc-agaaaagaacgaaaactgcaaaattcacac 169  Q
     |||||| |||||| |||| | ||| | ||||||||||||||||| ||||    
T  5154018 gcaagacggaagaatgctcgaaaaagggacgaaaactgcaaaatttacac 5154067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 16052239 - 16052142
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||| |||| ||| ||||||||||||| | |||| |||||| | |||||||||||||||||||||||||   ||| |||||||||| |||||||    
T  16052239 gacatcacatgaaggataaaggatatgaagattaaagaccaatgattcttagaaggtttttgaagacaatacaaaatgaagaaaattcatttcaagtt 16052142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 32239440 - 32239563
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| ||| ||||||||||||| ||||| ||||||  ||||| |||||| || ||||||||| |   ||| |||||||||| |||||||||    
T  32239440 gacatcacatgaaggataaaggatatgaagattgaagttcaatggtttttataaggttcttaaagacaataaaaagtgaagaaaattcatttcaagtttc 32239539  T
Q  113 aaggaattccaagactgaagaacg 136  Q
    |||| ||| |||||| ||| ||||    
T  32239540 aaggcattgcaagacagaaaaacg 32239563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 11310217 - 11310146
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||||| ||||| ||||||||||||||||| | ||| ||||||| | |||||||||||||||| ||||||||    
T  11310217 gacatcatgtgaaggatcaaggatatgaagatttaag-tcaatgattcttagaaggtttttgaaaacaataca 11310146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 28074665 - 28074829
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||  |||| ||||||||||||||||||||||||||| ||    |||  |||||||  |||| |||||| |||| ||||||||||||||| |||      
T  28074665 gacatcaaatgaaggatcaaggatatgaagaatgaagatcagtggtccttacgaggttttgaaagataatacaagttggggaaaattcatctcatgttct 28074764  T
Q  113 aaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaaattcacactagagttg 177  Q
    |||| ||| |||||   ||||||  ||  ||||| |||||||||| ||| ||| |||| ||||||    
T  28074765 aaggcatttcaagaagaaagaactttcgaaaaaggacgaaaactgaaaatttcgcactggagttg 28074829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 35135383 - 35135193
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaa-ttcatctcaagttt 111  Q
    ||||||||||| | |||  ||| |||| |||||||| |||||||  | |||| ||||||||||||||| |||| ||| ||||||| ||||||  |||||     
T  35135383 gacatcacgtggaggattgagggtatggagaatgaaaatcaatggttattaggaggtttttgaagacagtacaagtt-aggaaaatttcatcctaagttc 35135285  T
Q  112 caaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaaattcacactagagttgttgtctcatgctcccctgcgcatgag 203  Q
    ||||| ||| |||||  ||||||||||   ||||| | ||||| |||||||||| |  | ||||||||| | | ||  ||||||||||||||    
T  35135284 caaggcatttcaagatggaagaacgcttgaaaaaggatgaaaagtgcaaaattcgccttggagttgttgccccgtgtacccctgcgcatgag 35135193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 13530047 - 13529943
Alignment:
Q  33 ggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaag 132  Q
    |||||||||||||||| |||||||| | ||| ||| ||||| ||| ||||||| |||| || ||||||||| ||| || ||||| ||| ||||||  |||    
T  13530047 ggatatgaagaatgaaaatcaatgattcttataagctttttaaaggcaatacaagttg-gggaaattcatcccaaattccaaggcatttcaagacgaaag 13529949  T
Q  133 aacgct 138  Q
    ||||||    
T  13529948 aacgct 13529943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 13619586 - 13619482
Alignment:
Q  33 ggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaag 132  Q
    |||||||||||||||| |||||||| | ||| ||| ||||| ||| ||||||| |||| || ||||||||| ||| || ||||| ||| ||||||  |||    
T  13619586 ggatatgaagaatgaaaatcaatgattcttataagctttttaaaggcaatacaagttg-gggaaattcatcccaaattccaaggcatttcaagacgaaag 13619488  T
Q  133 aacgct 138  Q
    ||||||    
T  13619487 aacgct 13619482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 28859200 - 28859131
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaata 83  Q
    ||||||| |||| |||||||||||| |||| | ||||||||||  | ||||| |||||||||||||||||    
T  28859200 acatcacatgaaggatcaaggatatcaagattaaagatcaatggttcttagatggtttttgaagacaata 28859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 12774725 - 12774638
Alignment:
Q  94 aaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaag-aacgaaaactgcaaaattcacactagagttgttgt 181  Q
    |||||||||||||| |||||||| ||| |||||| ||||||||||  ||||||  ||||||| |||||||||| |||| ||| ||||||    
T  12774725 aaaattcatctcaaatttcaaggcatttcaagacggaagaacgct-tgaaaagcgacgaaaagtgcaaaattctcactggagctgttgt 12774638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 28292063 - 28291991
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||| |||| |||  |||||||||||| ||||||| ||||  | ||||||||| |||||||||||||||    
T  28292063 gacatcacatgaaggattgaggatatgaagattgaagattaatggttcttagaaggtctttgaagacaataca 28291991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 6888153 - 6888070
Alignment:
Q  15 catcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaat 98  Q
    ||||||||| |  ||| |||||||||||| ||||||||||||  | ||| || || ||||||||||||||| ||||| ||||||    
T  6888153 catcacgtgcagtatcgaggatatgaagattgaagatcaatggttcttaaaatgtctttgaagacaatacaagttgaagaaaat 6888070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 24120376 - 24120499
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||| ||||| |||||||||||| ||   |||| | |||||  | |||||||||||| ||||| |||| | | ||| |||||||||| ||||||| |    
T  24120376 gacatcatgtgaaggatcaaggatattaattttgaataccaatgtttcttagaaggttttcgaagataataaaagatgaagaaaattcatttcaagttcc 24120475  T
Q  113 aaggaattccaagactgaagaacg 136  Q
     ||||||| | |||| ||||||||    
T  24120476 taggaatttccagacggaagaacg 24120499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 28260196 - 28260097
Alignment:
Q  68 gtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaaattcac 167  Q
    ||||||||||| |||||| || | | ||||||||||||||||| ||  | ||| |||||  |||||||||||  ||||  ||||||| ||||||||||||    
T  28260196 gtttttgaagataatacaagtcgggaaaaattcatctcaagttccattgcatttcaagatggaagaacgctcgaaaaaagacgaaaaatgcaaaattcac 28260097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 14977071 - 14977002
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||| |||| ||||||||| ||||||| |||| |||||||| ||||||   ||||||||||| ||||||    
T  14977071 gacatcacatgaaagatcaaggacatgaagattgaaaatcaatgatttttag---gtttttgaagataataca 14977002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 12956648 - 12956705
Alignment:
Q  28 atcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||||||||||| |||||||||||   |||| |||||||||| |||| ||||||    
T  12956648 atcaaggatatgaagactgaagatcaattgtttttggaaggttttttaagataataca 12956705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 29291925 - 29291990
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaa 81  Q
    ||||||||||  ||| |||||||||| | ||||||||||||  | ||||||||| |||||||||||    
T  29291925 atcacgtgaagaatcgaggatatgaatattgaagatcaatggttcttagaaggtctttgaagacaa 29291990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 13583482 - 13583410
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||||| ||||| |||| ||||||||| || ||||| ||||||  | ||||||| | |||||||||||||||    
T  13583482 gacatcaagtgaaggatcgaggatatgatgattgaagttcaatggttcttagaagatatttgaagacaataca 13583410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 24696734 - 24696806
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||| | || ||||||||||||||||| |||||| || |   | |||||||||||||||||| ||||||    
T  24696734 gacatcacataaaggatcaaggatatgaagattgaagaccacttgttcttagaaggtttttgaagaaaataca 24696806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 19219173 - 19219101
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||||    
T  19219173 gacatcacatgaaggatcaaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaataca 19219101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 23908233 - 23908108
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||| | |||| ||||||| ||||||||| | ||||||||||  |||||||| ||||||||||||||||||  ||| |||||||||||  ||| || |    
T  23908233 gacatctcatgaaggatcaagaatatgaagatttaagatcaatggtttttagaaagtttttgaagacaatacaaattggggaaaattcattccaaattcc 23908134  T
Q  113 aaggaattccaagactgaagaacgct 138  Q
    |||||||| ||| |  ||||||||||    
T  23908133 aaggaatttcaaaaaggaagaacgct 23908108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 25919430 - 25919344
Alignment:
Q  16 atcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatc 103  Q
    ||||| |||| ||||||||||||||||| |||||||||| || |||||||| ||||||||||| ||| ||   ||| |||||||||||    
T  25919430 atcacatgaaggatcaaggatatgaagattgaagatcaacgatttttagaa-gtttttgaagataatgcaaagtgacgaaaattcatc 25919344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 28422606 - 28422676
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||||||| |||  |||||||||||| ||||| ||||||| | ||||||||| |||||||||||||||    
T  28422606 acatcacgtgaaggattgaggatatgaagattgaagttcaatga-tgttagaaggtatttgaagacaataca 28422676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 10341940 - 10342062
Alignment:
Q  14 acatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttca 113  Q
    |||||| ||||| ||| |||||||  |||| ||||||||| ||  | |||||||||||||||||||||||||   |||| |||| |||| ||||||| |     
T  10341940 acatcaagtgaaggattaaggatagaaagattgaagatcagtggttcttagaaggtttttgaagacaatacaaagtgagaaaaactcatttcaagttcct 10342039  T
Q  114 aggaattccaagactgaagaacg 136  Q
    |||| || | |||| ||||||||    
T  10342040 aggagtttctagacggaagaacg 10342062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 16970614 - 16970700
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaatt 99  Q
    ||||||| ||||| ||||||||||||||||  |||||| ||| |  | |||||||||||||||||| |||||| | ||| |||||||    
T  16970614 gacatcatgtgaaggatcaaggatatgaagtttgaagaccaacggttcttagaaggtttttgaagaaaatacaagatgaagaaaatt 16970700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 19263867 - 19263767
Alignment:
Q  15 catcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggt---ttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    |||||| |||| ||||||||||||||||| ||||||||||||  |  ||||||||   |||| |||||||||||   ||| |||||||||| ||||||||    
T  19263867 catcacatgaaggatcaaggatatgaagattgaagatcaatggttcatagaaggtttttttttaagacaatacaaagtgaagaaaattcatttcaagttt 19263768  T
Q  112 c 112  Q
    |    
T  19263767 c 19263767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 21829095 - 21828981
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| ||||  |||||||||||||||| ||||||||||||  |  | |||||| ||||||||||||| | ||| | ||| |||||| | ||||| |    
T  21829095 gacatcacatgaagtatcaaggatatgaagattgaagatcaatggttcatcgaaggtctttgaagacaatataagttaaagaatattcattttaagttcc 21828996  T
Q  113 aaggaattccaagac 127  Q
    |||| ||| ||||||    
T  21828995 aaggcatttcaagac 21828981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 26418872 - 26418994
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||| | |||| ||||||||||||||||| | |||||  |||  | ||||||||||||| |||| ||||||  ||| |||||||||||| || ||| |    
T  26418872 gacatcgcatgaaggatcaaggatatgaagattaaagattgatggttcttagaaggtttttaaagaaaatacaaattggggaaaattcatcccatgttgc 26418971  T
Q  113 aaggaattccaagactgaagaac 135  Q
    |||| ||| |||||  |||||||    
T  26418972 aaggcatttcaagatggaagaac 26418994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 33577886 - 33578004
Alignment:
Q  13 gacatcacgtgaatgatcaagg-atatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    |||||||| |||| |||||||| ||||||||||||||||| |||||  || |     ||||||||||||||||| |||| | |||| |||||||||||||    
T  33577886 gacatcacatgaaggatcaaggtatatgaagaatgaagataaatga--ttca-----tttttgaagacaatacatgttgggaaaaaatcatctcaagttt 33577978  T
Q  112 caaggaattccaagactgaagaacgc 137  Q
    ||||  ||| |||||  |||||||||    
T  33577979 caagacatttcaagatggaagaacgc 33578004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 19543038 - 19542972
Alignment:
Q  61 ttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac 127  Q
    ||||||||| |||||||||||||||   ||| |||||||||| ||||||| ||||| ||| ||||||    
T  19543038 ttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaagac 19542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 21653561 - 21653650
Alignment:
Q  75 aagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaaatt 164  Q
    ||||||||| | |||| | |||||||||| ||||||| |||| ||| |||||| |||||||||||  ||||| | ||||| |||| ||||    
T  21653561 aagacaataaaagttgggcaaaattcatcccaagttttaaggcatttcaagaccgaagaacgctcgaaaaaggatgaaaattgcagaatt 21653650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 11475085 - 11475161
Alignment:
Q  94 aaaattcatctcaagtttcaaggaattccaagactgaagaacgctcagaaaaga-acgaaaactgcaaaattcacac 169  Q
    |||| |||| ||||||| |||||  || |||||| |||||||||| | |||||  ||||||||||||||||||||||    
T  11475085 aaaaatcatttcaagttccaaggcgttgcaagacggaagaacgctaaaaaaagggacgaaaactgcaaaattcacac 11475161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 17152314 - 17152409
Alignment:
Q  21 gtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaagg 116  Q
    ||||| |||||||||||||||||||||| || ||||  | |||||||||||||||||| |||||| |||| |||||||||||| || ||| |||||    
T  17152314 gtgaaggatcaaggatatgaagaatgaatatgaatggttcttagaaggtttttgaagataatacaagttggggaaaattcatcccatgttccaagg 17152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 24047534 - 24047686
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaa-ggtttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    |||||| | |||| ||||||||||||||||||||||||||||||  | | | || ||||| ||||||||||||| |||  |||||||||| | ||||||     
T  24047534 gacatcccatgaaggatcaaggatatgaagaatgaagatcaatggttctcaaaaaggtttgtgaagacaatacaagttagggaaaattcaacccaagttc 24047633  T
Q  112 caaggaattccaagactgaagaacgctcagaaaagaacgaaaactgcaaaattc 165  Q
    ||||| ||| |||||  ||| |||||||  ||||| || |||||||||||||||    
T  24047634 caaggcatttcaagatggaaaaacgctcgaaaaaggac-aaaactgcaaaattc 24047686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 17862562 - 17862726
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| |||||||||||||||||||||| |||  ||  | ||||||  |||||||||||| |||| |||| |||||||||||| |||||| |    
T  17862562 gacatcacatgaaagatcaaggatatgaagaatgaaaatcggtggttcttagaatttttttgaagacagtacaagttggggaaaattcatcccaagttcc 17862661  T
Q  113 aaggaattccaagactgaagaacgctc-agaaaagaacgaaaactgcaaaattcacactagagtt 176  Q
    |||  ||| || | | ||| ||||||| | ||| | || ||||||||||||||  ||||||||||    
T  17862662 aagacatttcatggcggaaaaacgctcgaaaaagggacaaaaactgcaaaatttgcactagagtt 17862726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 18818873 - 18819015
Alignment:
Q  32 aggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaa 131  Q
    |||||||||| | ||||||| ||||  | ||||||||| |||||||||||||||   ||| |||||||||  ||||||| ||||  ||| |||||| |||    
T  18818873 aggatatgaaaactgaagattaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaattcaattcaagttccaagacattgcaagacggaa 18818972  T
Q  132 gaacgctcagaaaagaacgaaaactgcaaaattcacactagag 174  Q
    ||| ||||| ||| | | |||||||||||||||| ||| ||||    
T  18818973 gaatgctcaaaaagggatgaaaactgcaaaattcgcacaagag 18819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 21505101 - 21505007
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaa 107  Q
    |||||||| |||| |||||||||| |||||  |||||| |||||  | | ||||||||||||||||||||||| ||||| |||||||||| ||||    
T  21505101 gacatcacatgaaagatcaaggatgtgaagtttgaagaccaatggttctgagaaggtttttgaagacaatacaagttgaagaaaattcatttcaa 21505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 17884588 - 17884533
Alignment:
Q  30 caaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||| || |||||    
T  17884588 caaggatatgaagaatgaagatcattgattcttagaaggtttttgaaaactataca 17884533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 27417225 - 27417102
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| |||||| ||||||||   |||||| |||||  | | |||||||||||||| ||||||||   ||| |||||||||| ||||||| |    
T  27417225 gacatcacatgaaggatcaatgatatgaatgttgaagaccaatggttctaagaaggtttttgaaaacaatacaaagtgaagaaaattcatttcaagttcc 27417126  T
Q  113 aaggaattccaagactgaagaacg 136  Q
    ||||| || | |||| ||||||||    
T  27417125 aaggagtttccagacggaagaacg 27417102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 18236265 - 18236079
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| |||||   ||||||||| |||||  |||||  | |||||||||| |||||||||||||| | ||| |||||||||| |||||||      
T  18236265 gacatcacatgaaggatcacaaatatgaagattgaaggccaatggttcttagaaggttgttgaagacaatacaagatgaagaaaattcatttcaagttca 18236166  T
Q  113 aaggaattccaagactgaagaacgctc-agaaaagaacgaaaactgcaaaattcacactagagttgttgtctcatgctcccctgcgc 198  Q
    |||| |||  ||||| |||||| | || | ||| | || |||||| ||||||||||| | || ||| || ||||||| ||| |||||    
T  18236165 aaggcatttaaagacggaagaatgatcgaaaaagggactaaaactacaaaattcacattggaattgctgcctcatgcgcccatgcgc 18236079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 39730599 - 39730724
Alignment:
Q  13 gacatcacgtgaatgatcaagg-atatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagttt 111  Q
    |||||||| |||| |||||||| ||||||||| ||||||  |||   | |||||||  ||||||||||||||   |||| |||||||||||| ||||||     
T  39730599 gacatcacatgaaggatcaagggatatgaaga-tgaagactaatatttcttagaagaattttgaagacaataagagttggggaaaattcatcccaagttc 39730697  T
Q  112 caaggaattccaagactgaagaacgct 138  Q
    ||||| ||| |||||| ||||||||||    
T  39730698 caaggcatttcaagacggaagaacgct 39730724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 21849036 - 21848930
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||||| |||| |||||||||||  || |||||| |||||||  | ||| |||||||| ||| |||||||| ||||  ||||| ||||| ||| ||||    
T  21849036 gacatcacatgaaggatcaaggataataataatgaaaatcaatggttcttaaaaggttttggaacacaatacaagttggagaaaactcatc-caaatttc 21848938  T
Q  113 aaggaatt 120  Q
    ||||||||    
T  21848937 aaggaatt 21848930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 31262163 - 31262238
Alignment:
Q  27 gatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcat 102  Q
    |||| |||||||||||| ||||||| ||||  | |||| |||| ||||||||||||| | ||||| ||||||||||    
T  31262163 gatcgaggatatgaagattgaagattaatggttcttagtaggtctttgaagacaatataagttgaagaaaattcat 31262238  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 17415125 - 17414993
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||||||||| |||| |||| ||||||| |||| |||||||  | |||| || | ||||||||||| | |   ||| |||||||||| |||||||      
T  17415125 gacatcacgtgaaggatcgaggacatgaagattgaa-atcaatggttcttaggagttatttgaagacaacaaaaagtgaagaaaattcatttcaagttct 17415027  T
Q  113 aaggaattccaagactgaagaacgctcagaaaag 146  Q
    |||  ||| |||||| |||||||||||| |||||    
T  17415026 aagacattgcaagacggaagaacgctcaaaaaag 17414993  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 1732703 - 1732775
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    |||||||| |||| ||| ||| ||||||||| ||||||||||||| | ||||||  | ||||||| |||||||    
T  1732703 gacatcacatgaaggattaagaatatgaagattgaagatcaatgattcttagaatatatttgaaggcaataca 1732775  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 31274131 - 31274207
Alignment:
Q  36 tatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    |||||| | ||||||| ||||  | ||||||||| ||||||||||||| | ||||| ||||||||||  ||||||||    
T  31274131 tatgaaaattgaagattaatggttcttagaaggtctttgaagacaatataagttgaagaaaattcattccaagtttc 31274207  T

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Target: scaffold0282 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 22575 - 22479
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    |||||||||||||  |||||||||||||||||||||| ||||||  |  |||||||||||| ||||||||||| | ||| |||||||||| |||||||    
T  22575 gacatcacgtgaagaatcaaggatatgaagaatgaag-tcaatggttcatagaaggttttttaagacaatacaaggtgaagaaaattcatttcaagtt 22479  T

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Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 26917 - 26820
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtt 110  Q
    ||||||||||||| ||||||||||||||| | ||||| ||||||  | |||||| ||| ||||||||||||||   ||| |||||||| | |||||||    
T  26917 gacatcacgtgaaagatcaaggatatgaaaattgaagttcaatggttcttagaaagttcttgaagacaatacaaagtgaagaaaattcgtttcaagtt 26820  T

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Target: scaffold0171 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 21550 - 21622
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||| || |||| |||||| |||||||||| ||||||||||||  | ||||||||||||| |||||||||||    
T  21550 gacattacatgaaggatcaatgatatgaagattgaagatcaatggttcttagaaggtttttaaagacaataca 21622  T

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Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 6348 - 6419
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaataca 85  Q
    ||||||||||||| ||||||||||||||| | |||||| |||||  |  |||||| |||||||||| ||||||    
T  6348 gacatcacgtgaaggatcaaggatatgaa-attgaagaccaatggttcctagaagatttttgaagaaaataca 6419  T

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Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 228148 - 228026
Alignment:
Q  13 gacatcacgtgaatgatcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttc 112  Q
    ||||||||||||| |||| ||  |||||| | |||||| |||||  | ||||||||| |||||||||||||||   ||| |||||||||| ||||||| |    
T  228148 gacatcacgtgaaggatcgagtgtatgaatattgaaga-caatggttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttcc 228050  T
Q  113 aaggaattccaagactgaagaacg 136  Q
    |||  ||| |||||| ||||||||    
T  228049 aagacattgcaagacggaagaacg 228026  T

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Target: scaffold0386 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 11746 - 11638
Alignment:
Q  28 atcaaggatatgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagac 127  Q
    ||||||||||| ||||||||| || |||   | ||||||||||||||||| |||| || | ||| |||| ||||| || |||| | ||||||| | ||||    
T  11746 atcaaggatattaagaatgaatataaatagttcttagaaggtttttgaagtcaatgcaagatgacgaaagttcatttcgagttcctaggaatttccagac 11647  T
Q  128 tgaagaacg 136  Q
     ||||||||    
T  11646 ggaagaacg 11638  T

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Target: scaffold0190 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 11635 - 11528
Alignment:
Q  38 tgaagaatgaagatcaatgacttttagaaggtttttgaagacaatacacgttgaggaaaattcatctcaagtttcaaggaattccaagactgaagaacgc 137  Q
    |||||| |||| |||||||| | ||| ||||| |||||||||||||||   ||| |||||||||| ||||| | ||||| ||| |||||| || ||| ||    
T  11635 tgaagattgaatatcaatgattcttataaggtatttgaagacaatacaaagtgaagaaaattcatttcaag-tccaaggcattgcaagacggatgaatgc 11537  T
Q  138 tcagaaaag 146  Q
    ||| |||||    
T  11536 tcaaaaaag 11528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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