View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6834_low_8 (Length: 201)
Name: NF6834_low_8
Description: NF6834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6834_low_8 |
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| [»] scaffold0237 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 39263984 - 39264084
Alignment:
| Q |
13 |
acatcaccaacagctgctgttcggtcatgacagcagcaccaaaaacggtactcggaccaccccacagccgaagcactctaaaacaccataggacagcagc |
112 |
Q |
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| T |
39263984 |
acatcaccaacagctgctgttcggtcatgagagcagcaccaaaaacggtactcggaccaccccacagccgaagcactctaaaacaccataggacagcagc |
39264083 |
T |
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| Q |
113 |
a |
113 |
Q |
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| T |
39264084 |
a |
39264084 |
T |
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Target: scaffold0237 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 24688 - 24616
Alignment:
| Q |
111 |
gcagcttctgcacactcaaagccatcgatcttccaagtagctgcagcaagaacacaacccttcaccaaagaat |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
24688 |
gcagcttctgcacactcaaagccatcgatcttccaagtagctgccgcaagaacacaaccctacaccaaagaat |
24616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 29885140 - 29885068
Alignment:
| Q |
111 |
gcagcttctgcacactcaaagccatcgatcttccaagtagctgcagcaagaacacaacccttcaccaaagaat |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
29885140 |
gcagcttctgcacactcaaagccatcgatcttccaagtagctgccgcaagaacacaaccctacaccaaagaat |
29885068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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