View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6835_high_3 (Length: 411)
Name: NF6835_high_3
Description: NF6835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6835_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 38046743 - 38046344
Alignment:
| Q |
12 |
acatcactccatgactgccgtcactgaccacctttcaccattgccacccaacactctccatcatcatcgctgccaccctgcacccttcatcactatcatc |
111 |
Q |
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| T |
38046743 |
acatcactccatgactgccgtcactgaccacctttcaccattgccacccaacactctccatcatcatcgctgccaccctgcacccttcatcactatcatc |
38046644 |
T |
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| Q |
112 |
ctccatctcttaatcactcaaacacgtgatataacacacaatactatacagtggactgcctaagatacagcacatttaaaaatataagaacttatcagac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38046643 |
ctccatctcttaatcactcaaacacgtgatataacacacaatactatacagtggactgcctaagatacagcacatttaaaaatataagaacttatcagac |
38046544 |
T |
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| Q |
212 |
tcatatatatcctctttaattcttatccaactctcttaatctatttgtccttattttatcatgtcctcgtacgagtcctaaatagtaaattcaatcaatc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38046543 |
tcatatatatcctctttaattcttatccaactctcttaatctatttgtccttattttatcatgtcgtcgtacgagtcctaaatagtaaattcaatcaatc |
38046444 |
T |
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| Q |
312 |
aacaaatgatttccaacctcatcttgttttcaaacttgtcgataatatcgttattgttgctaagttatagccagtaatacaaccattcttgtatactttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38046443 |
aacaaatgatttccaacctcatcttgttttcaaacttgtcgataatatcgttattgttgctaagttatagccagtaatacaaccattcttgtatactttt |
38046344 |
T |
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