View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6835_low_1 (Length: 654)
Name: NF6835_low_1
Description: NF6835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6835_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 104 - 492
Target Start/End: Complemental strand, 11214722 - 11214348
Alignment:
| Q |
104 |
attgatgaaatatattgttaatgaaattctcaatttttgtggtacaaaaacaaaattctcaattattttatgagaaatgaaaataactccaaacaagtcg |
203 |
Q |
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| T |
11214722 |
attgatgaaatatattgttaatgaaattctcaatttttgtggtacaaaaacaaaattctcaattattttatgagaaatgaaaataactccaaacaagtcg |
11214623 |
T |
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| Q |
204 |
caattcaagcaactagtaaagtaagatacaggcatgtccagcatgtgagagagtagcatagcaacttcgtatgtctcgtatcacaccaatcgctatctct |
303 |
Q |
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| T |
11214622 |
caa-----gcaactagtaa-----gatacaggcatgtccagcatgtgagagagtagca-----acttcgtatgtctcgtatcacaccaatcgctatctct |
11214538 |
T |
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| Q |
304 |
cataaattgtaccaacataatatacttctccaacacaatatagagtgtgacaccattg-nnnnnnnnnnnnnnnnnnnnaaataagtgataaatccttac |
402 |
Q |
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| T |
11214537 |
cataaattgtaccaacataatatacctctccaactcaatatagagtgtgacaccattgtctttttgtttttttttttttaaataagtgataaatccttac |
11214438 |
T |
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| Q |
403 |
aacgacatcattttaattgtgaataatgatatttaaacatcaaaatccttacattatattggtataacttcataaagccatacaaatctg |
492 |
Q |
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| T |
11214437 |
aacgacatcattttaattgtgaataatgatatttaaacatcaaaatccttacattatattggtataacgtcataaagccatacaaatctg |
11214348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 491 - 646
Target Start/End: Complemental strand, 11214272 - 11214123
Alignment:
| Q |
491 |
tgtagtcacttgaatctaatgatttgattaatactataagtatttttatgttgnnnnnnntgaactctttaattattcccgcacccgcacacgcacacca |
590 |
Q |
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| T |
11214272 |
tgtagtcacttaaatctaatgatttgattaatactataagtatttttatgttgaaataaatgaactctttaattatt------cccgcacacgcacacca |
11214179 |
T |
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| Q |
591 |
ccacctaattaacaacttggattaaggaaagaaagcccgacaataacacgaaactc |
646 |
Q |
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| T |
11214178 |
ccacctaattaacaacatggattaaggaaagaaagcccgacaataacacgtaactc |
11214123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 11215391 - 11215316
Alignment:
| Q |
19 |
attaagaacattttcttccttcttaagttcacctcctttggtttttgcattccgaaacttcatgagatttttgtca |
94 |
Q |
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| T |
11215391 |
attaagaacattttcttccttcttaagttcacctcctttggtttttgcattccgaaacttcatgagatttttgtca |
11215316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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