View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6835_low_2 (Length: 420)

Name: NF6835_low_2
Description: NF6835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6835_low_2
NF6835_low_2
[»] chr6 (1 HSPs)
chr6 (152-403)||(30025389-30025655)
[»] chr4 (2 HSPs)
chr4 (1-148)||(18343159-18343306)
chr4 (68-114)||(22101579-22101625)
[»] chr2 (1 HSPs)
chr2 (1-148)||(36840934-36841081)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-148)||(164063-164210)
[»] chr3 (1 HSPs)
chr3 (9-145)||(18375002-18375136)
[»] scaffold1779 (1 HSPs)
scaffold1779 (1-123)||(402-524)
[»] scaffold0702 (1 HSPs)
scaffold0702 (1-43)||(7160-7202)
[»] chr8 (1 HSPs)
chr8 (1-43)||(35195245-35195287)
[»] chr7 (1 HSPs)
chr7 (20-144)||(46634334-46634463)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 152 - 403
Target Start/End: Complemental strand, 30025655 - 30025389
Alignment:
Q  152 atttcatggacgttcaatttctctttatggtcaat----gacatgcaaaattatgcttaatttaatttaaattgaatata-----------gactacgtt 236  Q
    ||||||||||||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||||           |||||||||    
T  30025655 atttcatggacgttcaatttctcttaatggtcaatatatgacatgcaaaattatgcttaatttaatttaaattgaatatatgactaatatagactacgtt 30025556  T
Q  237 gaaaaatatgaacttgtgatttatcattagttgaattaacaataaatttaacggtcaattgaaccaaccacaatttaaacgtgattaaccaaagtattag 336  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  30025555 gaaaaatatgaacttgtgatttatcattagttgaattagcaataaatttaacggtaacttgaaccaaccacaatttaaacgtgattaaccaaagtattag 30025456  T
Q  337 atgtgtataaaaatatgaatgctttaatatcattactcatttaaaatcgatatgaaactttacaact 403  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30025455 atgtgcataaaaatatgaatgctttaatatcattactcatttaaaatcgatatgaaactttacaact 30025389  T

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Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 18343306 - 18343159
Alignment:
Q  1 tagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343306 tagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 18343207  T
Q  101 acgaactcaattcattctttcagaataatcattagcacgaaataggtc 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18343206 acgaactcaattcattctttcagaataatcattagaacgaaataggtc 18343159  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
Q  68 ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca 114  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  22101625 ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca 22101579  T

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Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 36841081 - 36840934
Alignment:
Q  1 tagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36841081 tagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 36840982  T
Q  101 acgaactcaattcattctttcagaataatcattagcacgaaataggtc 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36840981 acgaactcaattcattctttcagaataatcattagaacgaaataggtc 36840934  T

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Target: scaffold0002 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 164063 - 164210
Alignment:
Q  1 tagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 100  Q
    |||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164063 tagctgtcgttaaacccgacaaaatactttatgaaatgggcggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 164162  T
Q  101 acgaactcaattcattctttcagaataatcattagcacgaaataggtc 148  Q
    | |||||||||||||||||||||||||||||||||  |||||||||||    
T  164163 aagaactcaattcattctttcagaataatcattagatcgaaataggtc 164210  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 18375002 - 18375136
Alignment:
Q  9 gttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactc 108  Q
    |||||||| | | ||||||||||||||||||| ||  ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  18375002 gttaaacctgactaaatactttatgaaatgggggg--tcccaaaaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactc 18375099  T
Q  109 aattcattctttcagaataatcattagcacgaaatag 145  Q
    |||| ||||||| |||||||  ||||| |||||||||    
T  18375100 aatttattctttgagaataactattagaacgaaatag 18375136  T

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Target: scaffold1779 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 402 - 524
Alignment:
Q  1 tagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctat 100  Q
    |||||||||||||||| |||| |||||||||||||||| | || ||  | ||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  402 tagctgtcgttaaaccgggcagaatactttatgaaatgagtggagtagccgaaaatatagccagaaaggctatttcaatagcggcgtcaaaaatgcctat 501  T
Q  101 acgaactcaattcattctttcag 123  Q
    |  ||| ||||||||| ||||||    
T  502 aaaaacgcaattcattatttcag 524  T

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Target: scaffold0702 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7160 - 7202
Alignment:
Q  1 tagctgtcgttaaacccggcaaaatactttatgaaatgggagg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7160 tagctgtcgttaaacccggcaaaatactttatgaaatgggagg 7202  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35195245 - 35195287
Alignment:
Q  1 tagctgtcgttaaacccggcaaaatactttatgaaatgggagg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35195245 tagctgtcgttaaacccggcaaaatactttatgaaatgggagg 35195287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 46634463 - 46634334
Alignment:
Q  20 caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc 113  Q
    ||||||| ||||||||||||||||  | ||| |||| |||||||||||| |||||||||||||| ||     |||||| |||||||||| |||  ||| |    
T  46634463 caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c 46634365  T
Q  114 attctttcagaataatcattagcacgaaata 144  Q
    |||||||||||| ||| ||||| || |||||    
T  46634364 attctttcagaagaataattagaaccaaata 46634334  T

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