View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6835_low_5 (Length: 240)

Name: NF6835_low_5
Description: NF6835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6835_low_5
NF6835_low_5
[»] chr7 (5 HSPs)
chr7 (69-218)||(28287646-28287791)
chr7 (123-179)||(43542440-43542496)
chr7 (123-179)||(33117877-33117933)
chr7 (123-179)||(27986229-27986284)
chr7 (132-184)||(32595209-32595261)
[»] chr2 (3 HSPs)
chr2 (130-185)||(18497212-18497267)
chr2 (123-176)||(28694387-28694440)
chr2 (130-179)||(38766288-38766337)
[»] chr8 (6 HSPs)
chr8 (129-179)||(373750-373800)
chr8 (123-176)||(5374616-5374669)
chr8 (123-183)||(37288371-37288431)
chr8 (123-176)||(40439758-40439811)
chr8 (124-176)||(23052267-23052319)
chr8 (130-184)||(34944143-34944197)
[»] chr1 (5 HSPs)
chr1 (123-176)||(12967283-12967336)
chr1 (131-184)||(33816370-33816423)
chr1 (131-184)||(33875840-33875893)
chr1 (129-184)||(2603108-2603163)
chr1 (132-184)||(21938051-21938103)
[»] chr3 (7 HSPs)
chr3 (124-184)||(118775-118835)
chr3 (126-176)||(52551092-52551142)
chr3 (130-179)||(1214775-1214825)
chr3 (123-184)||(11225837-11225898)
chr3 (123-184)||(11236093-11236154)
chr3 (129-170)||(25630149-25630190)
chr3 (123-175)||(46879408-46879460)
[»] chr4 (4 HSPs)
chr4 (129-184)||(31063634-31063689)
chr4 (124-176)||(27918229-27918281)
chr4 (123-178)||(19529675-19529730)
chr4 (124-176)||(42170691-42170743)
[»] chr5 (1 HSPs)
chr5 (123-176)||(15711034-15711087)
[»] chr6 (1 HSPs)
chr6 (123-168)||(32109584-32109629)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 28287646 - 28287791
Alignment:
Q  69 ttaatgattatttttccatcatgcaatttactagttattactttannnnnnnnncaattattttaatttatgttttccatgccattaataaaagatattt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||||||||    
T  28287646 ttaatgattatttttccatcatgcaatttactagttattactttattttttt--caattattttaatttatattttccatgccattaataaaagatattt 28287743  T
Q  169 ttgtaaaataagtcattaaaacatataattttggatggaaggagtgtcac 218  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||||    
T  28287744 ttgtaaaataactcattaaaac--gtaattttggatggaaggagtgtcac 28287791  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 43542440 - 43542496
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 179  Q
    ||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  43542440 caattcttttaatttacgttttccatgctattaataaatgatatttttgtaaaataa 43542496  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 33117933 - 33117877
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 179  Q
    ||||| ||||| || |||||||||||  |||||||||||||||||||||||||||||    
T  33117933 caattcttttagttcatgttttccatttcattaataaaagatatttttgtaaaataa 33117877  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 27986229 - 27986284
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 179  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  27986229 caattcttttaatttatgtttttcattccattaataaaagat-tttttttaaaataa 27986284  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 32595261 - 32595209
Alignment:
Q  132 taatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    |||||||||||||  || ||||||||||| ||||||||| |||||||| ||||    
T  32595261 taatttatgttttttataccattaataaaggatatttttataaaataactcat 32595209  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 18497212 - 18497267
Alignment:
Q  130 tttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcatt 185  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||    
T  18497212 tttaatttatgttttccaaaccattaataaaatatatttttgtaaaataactcatt 18497267  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 28694440 - 28694387
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||||||    
T  28694440 caattattttaatttatgtttttcataccattaataaagaatatttttgtaaaa 28694387  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 38766288 - 38766337
Alignment:
Q  130 tttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 179  Q
    |||||||||| ||| ||||||||||||| || |||| |||||||||||||    
T  38766288 tttaatttatttttcccatgccattaatgaaggatagttttgtaaaataa 38766337  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 373800 - 373750
Alignment:
Q  129 ttttaatttatgttttccatgccattaataaaagatatttttgtaaaataa 179  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  373800 ttttaatttatattttccatacaattaataaaagatatttttgtaaaataa 373750  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 5374616 - 5374669
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    ||||||||||| ||||||||||||||  |||||||||| |||||||||||||||    
T  5374616 caattattttattttatgttttccatatcattaataaatgatatttttgtaaaa 5374669  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 37288431 - 37288371
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtca 183  Q
    ||||||||||||||||| |||| ||| | |||||||||| |||||||||||||| ||||||    
T  37288431 caattattttaatttatatttttcatacaattaataaaaaatatttttgtaaaacaagtca 37288371  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 40439811 - 40439758
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    ||||| |||||||||||||||||||| |||||| | || |||||||||||||||    
T  40439811 caattcttttaatttatgttttccataccattagtgaaggatatttttgtaaaa 40439758  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 23052267 - 23052319
Alignment:
Q  124 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    ||||||||||||| ||||||||||| |||||||| || ||||| |||||||||    
T  23052267 aattattttaattaatgttttccataccattaatgaaggatatctttgtaaaa 23052319  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 34944143 - 34944197
Alignment:
Q  130 tttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    |||||||||||||||||||  ||||||| || |||||||| ||||||||| ||||    
T  34944143 tttaatttatgttttccatatcattaatgaaggatattttagtaaaataactcat 34944197  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 12967283 - 12967336
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    ||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  12967283 caattctttttatttatgttttccataccattaataaaggatatttttgtaaaa 12967336  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 33816370 - 33816423
Alignment:
Q  131 ttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    ||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||    
T  33816370 ttaatttatgttttccatgccattaatgaatgatattttcgtataataactcat 33816423  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 33875840 - 33875893
Alignment:
Q  131 ttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    ||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||    
T  33875840 ttaatttatgttttccatgccattaatgaatgatattttcgtataataactcat 33875893  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 2603108 - 2603163
Alignment:
Q  129 ttttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    ||||||||||||||||||||  | ||||| || |||||||||||||||||| ||||    
T  2603108 ttttaatttatgttttccatatcgttaatgaatgatatttttgtaaaataactcat 2603163  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 21938051 - 21938103
Alignment:
Q  132 taatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    ||||||||||||  ||| ||| |||| ||||||||||||||||||||| ||||    
T  21938051 taatttatgtttatcataccactaatgaaagatatttttgtaaaataattcat 21938103  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 118775 - 118835
Alignment:
Q  124 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    |||| ||||||||||||||| |||| |||||||| || |||||||||||||||||| ||||    
T  118775 aattcttttaatttatgtttaccataccattaattaatgatatttttgtaaaataactcat 118835  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 52551142 - 52551092
Alignment:
Q  126 ttattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  52551142 ttattttaatttatgtttttcataccattaataaatgatatttttgcaaaa 52551092  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 1214825 - 1214775
Alignment:
Q  130 tttaatttatgttttccatgccattaataaaagata-tttttgtaaaataa 179  Q
    ||||||||||||||||||| ||| ||||||| |||| ||||||||||||||    
T  1214825 tttaatttatgttttccataccaataataaaggatattttttgtaaaataa 1214775  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 11225837 - 11225898
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    ||||| ||||||| ||| ||||||||   |||||| ||||||||||||||||||||| ||||    
T  11225837 caattcttttaatgtattttttccatatgattaatgaaagatatttttgtaaaataattcat 11225898  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 11236093 - 11236154
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    ||||| ||||||||||| ||||||||   ||||||||||||| |||| ||||||||| ||||    
T  11236093 caattcttttaatttatattttccatataattaataaaagatgttttagtaaaataactcat 11236154  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 25630149 - 25630190
Alignment:
Q  129 ttttaatttatgttttccatgccattaataaaagatattttt 170  Q
    ||||||||||||||||| || ||||||||||| |||||||||    
T  25630149 ttttaatttatgttttcgataccattaataaaggatattttt 25630190  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 46879460 - 46879408
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaa 175  Q
    ||||| ||||||||||||||||||||   ||||||||| ||||||||| ||||    
T  46879460 caattcttttaatttatgttttccatattattaataaatgatatttttataaa 46879408  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 31063634 - 31063689
Alignment:
Q  129 ttttaatttatgttttccatgccattaataaaagatatttttgtaaaataagtcat 184  Q
    |||||||||||||||||||| |||||| | || |||||||||||||||||| ||||    
T  31063634 ttttaatttatgttttccataccattagtgaaggatatttttgtaaaataactcat 31063689  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 27918281 - 27918229
Alignment:
Q  124 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    |||| |||||||||||||||||||| | ||||||||| ||||||| |||||||    
T  27918281 aattcttttaatttatgttttccatactattaataaatgatatttatgtaaaa 27918229  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 19529730 - 19529675
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaata 178  Q
    ||||| |||| ||||| ||||||||| |||||||||||  ||||||||||||||||    
T  19529730 caattctttttatttaggttttccataccattaataaagaatatttttgtaaaata 19529675  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 42170691 - 42170743
Alignment:
Q  124 aattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    |||| |||||||||||||||||||  |||||||  || |||||||||||||||    
T  42170691 aattcttttaatttatgttttccacaccattaacgaatgatatttttgtaaaa 42170743  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 15711087 - 15711034
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatatttttgtaaaa 176  Q
    ||||| |||||||||||||||||||| |||||||| || ||||||||| |||||    
T  15711087 caattcttttaatttatgttttccataccattaatgaatgatatttttataaaa 15711034  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 32109629 - 32109584
Alignment:
Q  123 caattattttaatttatgttttccatgccattaataaaagatattt 168  Q
    ||||| |||||||||||||||||||| |||||||| || |||||||    
T  32109629 caattcttttaatttatgttttccataccattaatgaatgatattt 32109584  T

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