View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6838_high_2 (Length: 323)

Name: NF6838_high_2
Description: NF6838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6838_high_2
NF6838_high_2
[»] chr7 (8 HSPs)
chr7 (143-323)||(19216898-19217078)
chr7 (145-323)||(41256156-41256334)
chr7 (2-135)||(19217144-19217277)
chr7 (143-323)||(15891755-15891923)
chr7 (7-130)||(41255960-41256083)
chr7 (9-135)||(15891989-15892115)
chr7 (33-103)||(25010997-25011067)
chr7 (147-227)||(25011169-25011249)
[»] chr1 (8 HSPs)
chr1 (143-323)||(50516659-50516837)
chr1 (143-323)||(33803090-33803270)
chr1 (143-323)||(44711783-44711963)
chr1 (7-135)||(50516905-50517033)
chr1 (7-135)||(33803336-33803464)
chr1 (7-135)||(44711589-44711717)
chr1 (7-135)||(45909347-45909475)
chr1 (25-104)||(10549314-10549393)
[»] chr8 (7 HSPs)
chr8 (143-323)||(9139253-9139433)
chr8 (143-305)||(23254524-23254686)
chr8 (143-323)||(755418-755598)
chr8 (143-323)||(23709217-23709398)
chr8 (7-135)||(9139059-9139187)
chr8 (7-135)||(23254752-23254880)
chr8 (9-135)||(755664-755784)
[»] chr5 (8 HSPs)
chr5 (143-323)||(20235344-20235524)
chr5 (143-323)||(34832613-34832793)
chr5 (7-135)||(20235150-20235278)
chr5 (7-124)||(25761720-25761837)
chr5 (7-130)||(34832419-34832542)
chr5 (9-135)||(38966535-38966661)
chr5 (144-286)||(31049121-31049263)
chr5 (144-286)||(31044466-31044608)
[»] chr2 (13 HSPs)
chr2 (143-323)||(17311190-17311370)
chr2 (143-323)||(38621246-38621426)
chr2 (143-321)||(30213249-30213427)
chr2 (143-323)||(23937670-23937850)
chr2 (7-135)||(30213493-30213621)
chr2 (2-135)||(29809921-29810054)
chr2 (7-130)||(17310996-17311119)
chr2 (7-134)||(38621493-38621620)
chr2 (224-323)||(29809714-29809813)
chr2 (25-135)||(10925749-10925859)
chr2 (42-135)||(23937510-23937603)
chr2 (155-286)||(10925540-10925671)
chr2 (143-182)||(29809816-29809855)
[»] chr3 (4 HSPs)
chr3 (143-323)||(52971133-52971313)
chr3 (146-323)||(6160744-6160921)
chr3 (7-135)||(52970939-52971067)
chr3 (2-94)||(48094747-48094839)
[»] chr6 (1 HSPs)
chr6 (161-265)||(24131885-24131989)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 19217078 - 19216898
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  19217078 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaatcgggtccaattatcaatgtatgcttcctccgtttcgg 19216979  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  19216978 agtccacaatatccatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 19216898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 41256156 - 41256334
Alignment:
Q  145 caaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggag 244  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  41256156 caaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttaaaccgggtccaattatcaatatatgtttcctccgtgtcggag 41256255  T
Q  245 tccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    |||||||||| || |||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||    
T  41256256 tccacaatatacatccatgcagccatcacaattttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 41256334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 19217277 - 19217144
Alignment:
Q  2 atgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 101  Q
    |||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||    
T  19217277 atgaaatgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaaatacttt 19217178  T
Q  102 ttcgactgagcgtgtgcagattcagctctgtttg 135  Q
    ||| || || |||||||||||||| |||||||||    
T  19217177 ttcaaccgaacgtgtgcagattcaactctgtttg 19217144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 15891923 - 15891755
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||| ||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||     
T  15891923 tccaaaattgtcttttcaacataatccaaaaacttagggaattttgcgcatacaactttgaaccgggtccaattatcaatatacgcttcctccatttcga 15891824  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||| ||||||||            |||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||    
T  15891823 agtgcacaatat------------ccatcacagtcttcacaaccaaagcaggcttgatcgcttccccattcttgcctttga 15891755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 41255960 - 41256083
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||  |    
T  41255960 atgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacccatactactactcaggtactttttaaa 41256059  T
Q  107 ctgagcgtgtgcagattcagctct 130  Q
    |  |||||||||||||||||||||    
T  41256060 cgaagcgtgtgcagattcagctct 41256083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 15892115 - 15891989
Alignment:
Q  9 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 108  Q
    ||||||||||||||  ||||||||||||||||||| | |||||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  15892115 gaagcatgtattgcggtatgttgcaactctagcatctcatgaacggatttccagtttgtacttaaatcacccatactactactcagatactttttcaacc 15892016  T
Q  109 gagcgtgtgcagattcagctctgtttg 135  Q
     |||||||| |||||||  ||||||||    
T  15892015 tagcgtgtgtagattcaattctgtttg 15891989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 25010997 - 25011067
Alignment:
Q  33 aactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttttt 103  Q
    ||||||| |||||| ||||| ||||  ||||||||||| |||| || ||| |||||| |||||||||||||    
T  25010997 aactctaacatgttgtgaacagatttccagtttgtacttaaattactcatactactaatcagatacttttt 25011067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 25011169 - 25011249
Alignment:
Q  147 aaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatg 227  Q
    |||||||  ||| |||||||||||||||| | ||||| ||  |||||| | ||||||||||| | ||| ||||||||||||    
T  25011169 aaattgtagtttcaacatattccaaaaacataggaaacttgtcgcatacagctttgaaccggttgcaattatcaatatatg 25011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 50516837 - 50516659
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||| ||||    
T  50516837 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattat--atatatgcttcctccgtgtcgg 50516740  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  50516739 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 50516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 33803270 - 33803090
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  33803270 tccaaaattgtcttttcaacatattccaaaaatttggaaaattttgtgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccgtttcgg 33803171  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  33803170 agtccacaatatccatccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgcttgcccattcttgcctttga 33803090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 44711783 - 44711963
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  44711783 tccaaaattgtcttttcaacatattccaaaaattaggtaaattttgcgtatagaactttgaatcgggtccaattatcaatatatgcttcctccgtgtcgg 44711882  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44711883 agtccacaatatccgtccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttgcccattcttgcctttga 44711963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 50517033 - 50516905
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  50517033 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttttcaa 50516934  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    | || ||||||||||||||||| ||||||    
T  50516933 ccgatcgtgtgcagattcagctatgtttg 50516905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 33803464 - 33803336
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||  |||||| ||||||||| |||||| |||||||||| | |||||||| |    
T  33803464 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacagatttccagtttttactcaaatcacccatactactactcaaacactttttcaa 33803365  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    | ||||||| |||||||||||||||||||    
T  33803364 ccgagcgtgcgcagattcagctctgtttg 33803336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 44711589 - 44711717
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    |||||||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  44711589 atgaagcatgtattgtggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaattacccatactactactcaggtactttttcaa 44711688  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    | ||||| ||||||||||| || ||||||    
T  44711689 ccgagcgagtgcagattcaactttgtttg 44711717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 45909347 - 45909475
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||| |||||| |||  |||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||| ||||||||||| ||| ||||| |    
T  45909347 atgaaacatgtactgcggtatgttgcaactctagcatgttattaacagattgccagtttgtactcaaatcacccatactactactcaggtaccttttcaa 45909446  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    | |||||||||||||||||||||||||||    
T  45909447 ccgagcgtgtgcagattcagctctgtttg 45909475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 10549393 - 10549314
Alignment:
Q  25 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttc 104  Q
    ||||||| | |||||||||||| ||||||||||  ||||||||||| |||| || ||| |||||| |||||| |||||||    
T  10549393 tatgttgtagctctagcatgttgtgaacggattcccagtttgtacttaaatcactcatactactagtcagatgctttttc 10549314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 9139253 - 9139433
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||    
T  9139253 tccaaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttgaaccgagtccaatcatcaatgtatgcttcctccgtttcgg 9139352  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9139353 agtccacaatatctatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 9139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 143 - 305
Target Start/End: Complemental strand, 23254686 - 23254524
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  23254686 tccaaaattatcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccttttcgg 23254587  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgctt 305  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  23254586 agtccacaatatccatccatgcagccgtcacagtcttcaccaccgaaccaggcttaatcgctt 23254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 755598 - 755418
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||| |||| |||||| |||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||||||||||    
T  755598 tccaaaattgtcttttcaacataatccagaaacttaggaaattttgcgcatacatctttgaaccgagtccaattatcaatatatgcttcctccgtttcgg 755499  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||  ||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||||||    
T  755498 agtccacaatatccaaccagacagccatcacaattttcaccaccgaagcaggcttaatcgattccccattattgcctttga 755418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 23709217 - 23709398
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    ||||| |||||||||| || ||| ||||||||||| ||||||||  |||||| |||||||||    |||||| |||||||||||| ||||||||||||||    
T  23709217 tccaacattgtcttttcaaaataatccaaaaacttaggaaatttcccgcatacaactttgaattttgtccaattatcaatatatgcttcctccgtttcgg 23709316  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttca-ccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    | ||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |||||||||||||||||    
T  23709317 actcctcaatatccatccatgcagccatcacagtcttcacccacagaggcaggcttgatcgcttccccattcttgcctttga 23709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 9139059 - 9139187
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||| |||||||||| |||||||||| |    
T  9139059 atgaaacatgtattgcggtatgttgcaactctagcatgttatgaacagattgccagtttgtactcaaatcactcatactactactcaaatactttttcaa 9139158  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
      ||||||||||| ||||| |||||||||    
T  9139159 tcgagcgtgtgcacattcaactctgtttg 9139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 23254880 - 23254752
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||| ||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| | | || |||||||||| ||||||| || |    
T  23254880 atgaagcatgttttgcggtatgatgcaactctagcatgttatgaacggattgccagtttgtactcaaatcatctatactactactcaaatactttctcaa 23254781  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
      |||||| | ||||||||||||||||||    
T  23254780 tcgagcgtctacagattcagctctgtttg 23254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 755784 - 755664
Alignment:
Q  9 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 108  Q
    |||||||||||| |  |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||      |||| || ||||||||| ||     
T  755784 gaagcatgtattacggtatgttgcaactatagcatgtcatgaacggatttgcagtttgtactcaaataaccca------tacttaggtactttttcaacc 755691  T
Q  109 gagcgtgtgcagattcagctctgtttg 135  Q
    |||||||||||||||||||||| ||||    
T  755690 gagcgtgtgcagattcagctctatttg 755664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 20235344 - 20235524
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  20235344 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgtatagaactttgaaccgggtccaattatcaatgtatgctttctccgtttcgg 20235443  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  20235444 agtccacaatatccatccatgcagccatgacagtcttcaccactgaaccaggcttaatcgcttgcccattcttgcctttga 20235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 34832613 - 34832793
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||    
T  34832613 tccaaaattttcttttcaacatattccaaaaactcgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgtttcctctgtgtcgg 34832712  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||    
T  34832713 agtccacaatatccatccatgcagccatcacagtctacaccaccgacgcatgcttaattgcttgtccattcttgcctttga 34832793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 20235150 - 20235278
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||  |||||||||  ||||||||| |    
T  20235150 atgaagcatgtattgcggtatgtttcaactctagtatgttatgaacggattgccagtttgtactcaaatcacccatattactactcaattactttttcaa 20235249  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    |||||||||||||||||||||||||||||    
T  20235250 ctgagcgtgtgcagattcagctctgtttg 20235278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 25761837 - 25761720
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  ||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  25761837 atgaagcatgtattgcggtattttgcaactctaccatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttttcaa 25761738  T
Q  107 ctgagcgtgtgcagattc 124  Q
    | ||||||||||||||||    
T  25761737 ccgagcgtgtgcagattc 25761720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 34832419 - 34832542
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||  ||||||||| |    
T  34832419 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatctcccatactactactcaagtactttttcaa 34832518  T
Q  107 ctgagcgtgtgcagattcagctct 130  Q
       |||||||| ||||||||||||    
T  34832519 acaagcgtgtgaagattcagctct 34832542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 38966661 - 38966535
Alignment:
Q  9 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 108  Q
    |||||||||||| |  ||||||||||||||||||||| |||||||| ||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  38966661 gaagcatgtattacggtatgttgcaactctagcatgtcatgaacggctttccagtttgtactaaaatcacccatactactactcagatactttttcaacc 38966562  T
Q  109 gagcgtgtgcagattcagctctgtttg 135  Q
    ||||||||||| |||||||||| ||||    
T  38966561 gagcgtgtgcatattcagctctatttg 38966535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 31049121 - 31049263
Alignment:
Q  144 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 243  Q
    |||||||| | |||| |||||||| || |||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || || ||    
T  31049121 ccaaaattttattttcaacatatttcacaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaga 31049220  T
Q  244 gtccacaatatccacccatgcagccatcacagtcttcaccacc 286  Q
     | ||| |||||| |||||||| |||| || ||||||||||||    
T  31049221 attcacgatatcctcccatgcaaccataaccgtcttcaccacc 31049263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 31044466 - 31044608
Alignment:
Q  144 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 243  Q
    |||||||| | |||| |||||||| ||||||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || ||  |    
T  31044466 ccaaaattatattttcaacatatttcaaaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaaa 31044565  T
Q  244 gtccacaatatccacccatgcagccatcacagtcttcaccacc 286  Q
     | ||| |||||| |||||||| |||| || || |||||||||    
T  31044566 attcacgatatcctcccatgcaaccataaccgttttcaccacc 31044608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 17311190 - 17311370
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  17311190 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccggttccaattatcaatgtatgcttcctccgtttcgg 17311289  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||    
T  17311290 agtccacaatatccatccatgcatccatcacagtcttcaccaccgaaccaggcttaatcgcttgccaattcttgtctttga 17311370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 38621426 - 38621246
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  | ||||    
T  38621426 tccaaaattgtcttttcaacatattcctataacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctctatgtcgg 38621327  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  38621326 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcatgcttaatcgcttgcccattcttgcctttga 38621246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 30213427 - 30213249
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | ||    
T  30213427 tccaaaattgtcttttcaacatattccaaaaacatgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctacgtgttgg 30213328  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgccttt 321  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30213327 agtccacagtatccatccatgcagccatcatagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgccttt 30213249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 23937670 - 23937850
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||| ||||||||| | | |||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||    
T  23937670 tccaaaattgtcttttcaacataatccaaaaacatagaaaattttgcgcatacaactttgaactgggtccaattatcaatatatgcttcctccgtttcgg 23937769  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||| ||| |||||||||||||    
T  23937770 agtccacaatatccaaccatgcagccatcacaatcttcaccaccaaagcaggcttgatcgcttcccccttcttgcctttga 23937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 30213621 - 30213493
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  30213621 atgaagcatgtattgcagtatgttgcaactctaccatgttatgaacagattgccagtttgtactcaaatcacccatactactactcaggtactttttcaa 30213522  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    | |||||||||||||||||||||||||||    
T  30213521 ccgagcgtgtgcagattcagctctgtttg 30213493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 29810054 - 29809921
Alignment:
Q  2 atgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttt 101  Q
    |||| ||||| ||||||||||  |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| |||||||    
T  29810054 atgaaatgaatcatgtattgcggtatgttgcaactttagcatgttatgaacggatttccagtttgtactcaaatgacccatactactactcaaatacttt 29809955  T
Q  102 ttcgactgagcgtgtgcagattcagctctgtttg 135  Q
    ||| || |||||||||||||||||||||||||||    
T  29809954 ttcaacagagcgtgtgcagattcagctctgtttg 29809921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 17310996 - 17311119
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||| |||||||||| |||||||||| |    
T  17310996 atgaagcatgtattgcggtatgttgcaactctagaatgttatgaacggattgctagtttgtactcaaatcacccatactactactcaaatactttttcaa 17311095  T
Q  107 ctgagcgtgtgcagattcagctct 130  Q
    | ||||||||||||||||||||||    
T  17311096 ccgagcgtgtgcagattcagctct 17311119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 38621620 - 38621493
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| || |    
T  38621620 atgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttctcaa 38621521  T
Q  107 ctgagcgtgtgcagattcagctctgttt 134  Q
    | ||| ||||||||||||||||||||||    
T  38621520 ccgagtgtgtgcagattcagctctgttt 38621493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 29809813 - 29809714
Alignment:
Q  224 tatgattcctccgtttcggagtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  29809813 tatgcttcctccgtttcggagtccacaatatccacccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgctttcccatttttgcctttga 29809714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 10925859 - 10925749
Alignment:
Q  25 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattc 124  Q
    |||||||  ||||||||||||| |||||||| |  ||||||||||| |||| |||||  ||||||  |||||||||||||||| |    ||||||||||     
T  10925859 tatgttgtgactctagcatgttgtgaacggagttccagtttgtacttaaatcacccacactactagccagatactttttcgaccggttatgtgcagattt 10925760  T
Q  125 agctctgtttg 135  Q
    |||||||||||    
T  10925759 agctctgtttg 10925749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 23937510 - 23937603
Alignment:
Q  42 atgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattcagctctgtttg 135  Q
    |||| ||||| |||||| ||||||||||| | || | |||| |||||| |||||||||||||| || ||| ||||||||||||  |||||||||    
T  23937510 atgtcatgaatggattgtcagtttgtacttagatcatccatactactattcagatactttttcaaccgagtgtgtgcagattcgactctgtttg 23937603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 10925671 - 10925540
Alignment:
Q  155 ttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatat 254  Q
    |||| |||||||||||||||||| ||||||||   ||||| |||||||||  || | ||| |||||| ||||| || ||  || ||||| | ||| ||||    
T  10925671 ttttcaacatattccaaaaacttaggaaatttgttgcatacaactttgaataggttgcaattatcaacatatggttgctatgtatcggaattcacgatat 10925572  T
Q  255 ccacccatgcagccatcacagtcttcaccacc 286  Q
    || |||||||| ||| ||| ||||||||||||    
T  10925571 cctcccatgcaaccaccaccgtcttcaccacc 10925540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 29809855 - 29809816
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaa 182  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29809855 tccaaaattgtcttttcaacatattccaaaaacttgggaa 29809816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 52971133 - 52971313
Alignment:
Q  143 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 242  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||  ||||||||||| ||    
T  52971133 tccaaaattgtcttttcaacatatttcaaaaacttgggaaattttgcgcatataactttgaaccgggtccaattatcaatgtatacttcctccgttttgg 52971232  T
Q  243 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  52971233 agtccacaatatccacccatgcagccatcatagtcttcaccaccgaaccaggcttaatcgctttctcattcttgcctttga 52971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 146 - 323
Target Start/End: Original strand, 6160744 - 6160921
Alignment:
Q  146 aaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagt 245  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  6160744 aaaattgtcttttcaacataatccaaaaacttaggaaattttgtgcatacaactttgaaccgggtccaattatcaatatatgcttcctccatttcggagt 6160843  T
Q  246 ccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 323  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  6160844 ccacaatatccatccatgcaaccatcacagtcttcaccaccgaagcacgcttaatcgcttgcccattcttgcctttga 6160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 52970939 - 52971067
Alignment:
Q  7 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 106  Q
    ||||||||||||||||  |||||||||||||||||||||||  ||||||||  |||||||||||||||| |||||| |||||||||| || ||||||| |    
T  52970939 atgaagcatgtattgcggtatgttgcaactctagcatgttacaaacggatttccagtttgtactcaaatcacccatactactactcaaatgctttttcaa 52971038  T
Q  107 ctgagcgtgtgcagattcagctctgtttg 135  Q
    | |||||| ||||||||||||||||||||    
T  52971039 ccgagcgtctgcagattcagctctgtttg 52971067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 48094839 - 48094747
Alignment:
Q  2 atgagatgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcag 94  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |||||||||||    
T  48094839 atgaaatgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacctatactactactcag 48094747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 24131885 - 24131989
Alignment:
Q  161 acatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatatccaccc 260  Q
    |||||||||| ||||||| |  ||||| |||| | ||||||||||||| | ||| |||||| ||||| ||| ||| | || || |||||||||||| |||    
T  24131885 acatattccacaaacttgagccatttttcgcaaacaactttgaaccggctgcaattatcaacatatgtttcttccatatcagaatccacaatatcctccc 24131984  T
Q  261 atgca 265  Q
    |||||    
T  24131985 atgca 24131989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University