View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6838_low_3 (Length: 251)
Name: NF6838_low_3
Description: NF6838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6838_low_3 |
 | |
|
| [»] scaffold0021 (2 HSPs) |
| |
|
| [»] scaffold0055 (7 HSPs) |
| |
|
| [»] scaffold0052 (8 HSPs) |
| |
|
| [»] scaffold0515 (1 HSPs) |
| |
|
| [»] scaffold0306 (1 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 45797 - 45563
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45797 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
45698 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45697 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
45598 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45597 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
45563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 62720 - 62506
Alignment:
| Q |
37 |
agcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtccggtgaagtgttcggattgcg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
62720 |
agcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtccggtgaagtgttcggatcgcg |
62621 |
T |
|
| Q |
137 |
gcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaacaaggtttccgtaggtgaacc |
236 |
Q |
| |
|
|||||| ||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
62620 |
gcgacgggggcggttcgccgcccccgacgtcacgagaagtccattgaaccttatcatttagaggaaggagaagtcgtaacaaggtttccgtaggtgaacc |
62521 |
T |
|
| Q |
237 |
tgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
62520 |
tgcggaaggatcatt |
62506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 66251 - 66017
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66251 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
66152 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66151 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
66052 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
66051 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
66017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 79629 - 79395
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79629 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
79530 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79529 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
79430 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
79429 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
79395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 72008 - 72239
Alignment:
| Q |
20 |
acgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtccggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72008 |
acgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtccggt |
72107 |
T |
|
| Q |
120 |
gaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaacaag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72108 |
gaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaacaag |
72207 |
T |
|
| Q |
220 |
gtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
72208 |
gtttccgtaggtgaacctgcggaaggatcatt |
72239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 41380 - 41146
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41380 |
tcaacgaggaattcctagtaagcgcgagtcatcagcacgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
41281 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41280 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
41181 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41180 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
41146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 50628 - 50394
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50628 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
50529 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50528 |
ggtgaagtgttcggattgcggcgacgtgggtggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
50429 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
50428 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
50394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 4865 - 4922
Alignment:
| Q |
194 |
ttagaggaaggagaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4865 |
ttagaggaaggagaagtcgtaacaaggattccgtaggtgaacctgcggaaggatcatt |
4922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 32066 - 32032
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcag |
51 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
32066 |
tcaatgaggaattcctagtaagcgcgagtcatcag |
32032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 25153 - 24919
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25153 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
25054 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25053 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
24954 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24953 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
24919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 35677 - 35911
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35677 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
35776 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35777 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
35876 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35877 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
35911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 47535 - 47301
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47535 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
47436 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47435 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
47336 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47335 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
47301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 27012 - 26781
Alignment:
| Q |
20 |
acgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtccggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27012 |
acgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtccggt |
26913 |
T |
|
| Q |
120 |
gaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaacaag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26912 |
gaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaacaag |
26813 |
T |
|
| Q |
220 |
gtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26812 |
gtttccgtaggtgaacctgcggaaggatcatt |
26781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 5983 - 5749
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983 |
tcaacgaggaattcctagtaagcgcgagtcatcagcacgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
5884 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5883 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
5784 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5783 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
5749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 30823 - 31057
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30823 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
30922 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30923 |
ggtgaagtgttcggattgcggcgacgtgggtggtccgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
31022 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31023 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
31057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 79670 - 79613
Alignment:
| Q |
194 |
ttagaggaaggagaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
79670 |
ttagaggaaggagaagtcgtaacaaggattccgtaggtgaacctgcggaaggatcatt |
79613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 63999 - 64033
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcag |
51 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
63999 |
tcaatgaggaattcctagtaagcgcgagtcatcag |
64033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7759 - 7993
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7759 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcacgttgaccacgtccctgccctttgtacacaccgcccatcgctcctaccgattgaatggtcc |
7858 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7859 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcctgcgacgttgtgagaagtccactgaaccttatcatttagagaaaggagaaatcgtaac |
7958 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7959 |
aaggttttcgtaggtgaacctgtagaaggatcatt |
7993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7769 - 8003
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7769 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcacgttgaccacgtccctgccctttgtacacaccgcccatcgctcctaccgattgaatggtcc |
7868 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7869 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcctgcgacgttgtgagaagtccactgaaccttatcatttagagaaaggagaaatcgtaac |
7968 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7969 |
aaggttttcgtaggtgaacctgtagaaggatcatt |
8003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 25380 - 25614
Alignment:
| Q |
17 |
tcaacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacaccgcccgtcgctcctaccgattgaatggtcc |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25380 |
tcaacgaggaattcctagtaagtgcgagtcatcagctcacgttgactacgtccctgccctttgtacacaccgcccatcgctcctaccgattgaatggtcc |
25479 |
T |
|
| Q |
117 |
ggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatttagaggaaggagaagtcgtaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
25480 |
ggtgaagtgttcggattgcggcgacgtgggcggtccgctgcctgcgacgttgtgagaagtccactgaaccttatcatttagagaaaggagaaatcgtaac |
25579 |
T |
|
| Q |
217 |
aaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |
|
|
| T |
25580 |
aaggttttcgtaggtgaacctgtagaaggatcatt |
25614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 34234 - 34390
Alignment:
| Q |
95 |
gctcctaccgattgaatggtccggtgaagtgttcggattgcggcgacgtgggcggttcgctgcccgcgacgttgtgagaagtccactgaaccttatcatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34234 |
gctcctaccgattgaatggtccggtgaagtgttcggattgcggcgacgtgggcggtccgctgcctgcgacgttgtgagaagtccactgaaccttatcatt |
34333 |
T |
|
| Q |
195 |
tagaggaaggagaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatt |
251 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34334 |
tagagaaaggagaaatcgtaacaaggttttcgtaggtgaacctgtagaaggatcatt |
34390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 47044146 - 47044214
Alignment:
| Q |
19 |
aacgaggaattcctagtaagcgcgagtcatcagctcgcgttgactacgtccctgccctttgtacacacc |
87 |
Q |
| |
|
||||||||||||||| ||||||| |||||| || |||||| |||| |||| ||| |||||||||||| |
|
|
| T |
47044146 |
aacgaggaattcctaataagcgcaagtcatttgcccgcgttaactaagtccatgcgttttgtacacacc |
47044214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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