View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6838_low_4 (Length: 246)
Name: NF6838_low_4
Description: NF6838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6838_low_4 |
 | |
|
| [»] scaffold0055 (9 HSPs) |
| |
|
| [»] scaffold0052 (10 HSPs) |
| |
|
| [»] scaffold0021 (1 HSPs) |
| |
|
| [»] scaffold0152 (2 HSPs) |
| |
|
| [»] scaffold0515 (1 HSPs) |
| |
|
| [»] scaffold0306 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0055 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 40886 - 41116
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40886 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
40985 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40986 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
41085 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
41086 |
caagccgacccatatgtattcaaactgattc |
41116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 50134 - 50364
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50134 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
50233 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50234 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
50333 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
50334 |
caagccgacccatatgtattcaaactgattc |
50364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 65757 - 65987
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65757 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
65856 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65857 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
65956 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
65957 |
caagccgacccatatgtattcaaactgattc |
65987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 79135 - 79365
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79135 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
79234 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79235 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
79334 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
79335 |
caagccgacccatatgtattcaaactgattc |
79365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 5182 - 4952
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5182 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagaaaaatttaaatt |
5083 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5082 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcatttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
4983 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4982 |
caagccaacccatatgtattcaaactgattc |
4952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 72499 - 72269
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72499 |
atccgttgtcgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
72400 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72399 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
72300 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
72299 |
caagccgacccatatgtattcaaactgattc |
72269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 31791 - 32021
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31791 |
atccgttgccgagagttattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
31890 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31891 |
ccttgacgcattcagcgccggggtttgaattttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
31990 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
31991 |
caagccaactcatatgtattcaaactgattc |
32021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 14272 - 14192
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgc |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14272 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccctctccggtgccatgcaggtgtgc |
14192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25802 - 25722
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgc |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
25802 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaacctctccggtgccatgcaggtgtgc |
25722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 5489 - 5719
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5489 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
5588 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5589 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
5688 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
5689 |
caagccgacccatatgtattcaaactgattc |
5719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 31317 - 31087
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31317 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
31218 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31217 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
31118 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
31117 |
caagccgacccatatgtattcaaactgattc |
31087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 36171 - 35941
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36171 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
36072 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36071 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
35972 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
35971 |
caagccgacccatatgtattcaaactgattc |
35941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 47041 - 47271
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47041 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
47140 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47141 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
47240 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
47241 |
caagccgacccatatgtattcaaactgattc |
47271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 24659 - 24889
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24659 |
atccgttgtcgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
24758 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24759 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
24858 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
24859 |
caagccgacccatatgtattcaaactgattc |
24889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 79353 - 79583
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
79353 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagaaaaatttaaatt |
79452 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79453 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcatttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
79552 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
79553 |
caagccaacccatatgtattcaaactgattc |
79583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 64274 - 64044
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
64274 |
atccgttgccgagagttattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
64175 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
64174 |
ccttgacgcattcagcgccggggtttgaattttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacct |
64075 |
T |
|
| Q |
216 |
caagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
64074 |
caagccaactcatatgtattcaaactgattc |
64044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 15844 - 15940
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15844 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaa |
15940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 70263 - 70343
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgc |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
70263 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccctctccggtgccatgcaggtgtgc |
70343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 26704 - 26751
Alignment:
| Q |
199 |
cgaggtgcagaacacctcaagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26704 |
cgaggtgcagaacacctcaagccgacccatatgtattcaaactgattc |
26751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 45302 - 45533
Alignment:
| Q |
16 |
atccgttgccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaaatttaaatt |
115 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45302 |
atccgttgtagagagtcattttatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgcttagagcaaaatttaaatt |
45401 |
T |
|
| Q |
116 |
ccttgacgcattcagcgccgggg-tttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacc |
214 |
Q |
| |
|
| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402 |
ctttgacgcattcagcgccggggttttttgttttggcacaaaggaggacgcacttcgtcgccttcctctgaaccagaggtaagccgaggtgcagaacacc |
45501 |
T |
|
| Q |
215 |
tcaagccaacccatatgtattcaaactgattc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45502 |
tcaagccaacccatatgtattcaaactgattc |
45533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 25867 - 25644
Alignment:
| Q |
24 |
ccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaa-atttaaattccttgac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25867 |
ccgagagtcattctatataatgtgtcaaaacacaacacacacgaaaaccgtctccggtgtcatgcaggtgtgctcagagcaaacttttaaattccttgat |
25768 |
T |
|
| Q |
123 |
gcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
222 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25767 |
gaattcagcgctggggtttgagttttggcacaaaggaggtcgcacttcgtcatattcttctaaaccagaggtaagccgaggtgcagaacacctcaagcca |
25668 |
T |
|
| Q |
223 |
acccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25667 |
gcccatatgtattcaaactgattc |
25644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 34643 - 34420
Alignment:
| Q |
24 |
ccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaa-atttaaattccttgac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34643 |
ccgagagtcattctatataatgtgtcaaaacacaacacacacgaaaaccgtctccggtgtcatgcaggtgtgctcagagcaaacttttaaattccttgat |
34544 |
T |
|
| Q |
123 |
gcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
222 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34543 |
gaattcagcgttggggtttgagttttggcacaaaggaggtcgcacttcgtcatattcttctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
34444 |
T |
|
| Q |
223 |
acccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
34443 |
gcccatatatattcaaactgattc |
34420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 8246 - 8023
Alignment:
| Q |
24 |
ccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaa-atttaaattccttgac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8246 |
ccgagagtcattctatataatgtgtcaaaacacaacacacacgaaaaccgtctccggtgtcatgcaggtgtgctcagagcaaacttttaaattccttgat |
8147 |
T |
|
| Q |
123 |
gcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
222 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8146 |
gaattcagcgttggggtttgagttttggcacaaaggaggtcgcacttcgtcatattcttctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
8047 |
T |
|
| Q |
223 |
acccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
8046 |
gcccatatatattcaaactgattc |
8023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 8256 - 8033
Alignment:
| Q |
24 |
ccgagagtcattctatataatgtgtcaaaacacaacacgcacgaaaaccgtctccggtgccatgcaggtgtgctcagagcaaa-atttaaattccttgac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8256 |
ccgagagtcattctatataatgtgtcaaaacacaacacacacgaaaaccgtctccggtgtcatgcaggtgtgctcagagcaaacttttaaattccttgat |
8157 |
T |
|
| Q |
123 |
gcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
222 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8156 |
gaattcagcgttggggtttgagttttggcacaaaggaggtcgcacttcgtcatattcttctgaaccagaggtaagccgaggtgcagaacacctcaagcca |
8057 |
T |
|
| Q |
223 |
acccatatgtattcaaactgattc |
246 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
8056 |
gcccatatatattcaaactgattc |
8033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 29339864 - 29339790
Alignment:
| Q |
114 |
ttccttgacgcattcagcgccggggtttgagttttggcacaaaggaggacgcacttcgtcgccatcctctgaacc |
188 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
29339864 |
ttccttgacgcatttagcgtcggggtttgagttttgacacaaaggaggacgcacttcgtcgtcttcctctgaacc |
29339790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 1780899 - 1780932
Alignment:
| Q |
114 |
ttccttgacgcattcagcgccggggtttgagttt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1780899 |
ttccttgacgcattcagcgccggggtttgagttt |
1780932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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