View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6840_high_1 (Length: 533)
Name: NF6840_high_1
Description: NF6840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6840_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 210 - 411
Target Start/End: Original strand, 38634581 - 38634782
Alignment:
| Q |
210 |
atattatacgaagatgtagagattatccaaaatggtgatggctatttgctatgaaatatggtggagtagaaacaagagatgcttcgaaggaattgaaatt |
309 |
Q |
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| T |
38634581 |
atattatacgaagatgtagagattatccaaaatggtgatggctatttgctatgaaatatggtggagtagaaacaagagatgcttcgaaggaattgaaatt |
38634680 |
T |
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| Q |
310 |
caatgtgctgtcaggtgttgcaacaaggctttaaaaaatgttcacaatttcaattatgctcataatgttgtagtgcagatccagcaccatccaatcctgt |
409 |
Q |
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| T |
38634681 |
ccatgtgctgtcaggtgttgcaacaaggctttaaaaaatgttcacaatttcaattatgctcataatgttgtagtgcagatccagtaccatccaatcctgt |
38634780 |
T |
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| Q |
410 |
ac |
411 |
Q |
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| T |
38634781 |
ac |
38634782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 38634369 - 38634544
Alignment:
| Q |
7 |
ttggagttaaaatggctctttttaataaaggaatcaattgcactccacaatgttgttttcgtgatagtcatattgaaaccattgaacatttattcatgga |
106 |
Q |
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| T |
38634369 |
ttggagttaaaatggctctttttaataaaggaatcaattgcaatccacaatgtagttttcgtgatagtcatattgaaaccattgaacatttattcatgga |
38634468 |
T |
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| Q |
107 |
atgtgaatgggcacagtctgtgtggtttgtgtctccgttgggcgtcaatttttctagcaccactgctcctgctaaa |
182 |
Q |
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| T |
38634469 |
atgtaaatgggcacagtctgtgtggtttgtgtctccgttgggcgtcaatttttctagcaccactgctcctgctaaa |
38634544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 407 - 517
Target Start/End: Original strand, 38634803 - 38634913
Alignment:
| Q |
407 |
tgtacgcgtgcaaccaggatgctataaattgaacgttgacgctgctggtccttcggctgacagaaattggggccttgccgcaattataagagacgttgaa |
506 |
Q |
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| T |
38634803 |
tgtacgcgtgcaaccaggatgctataaattgaacgttgacgctgctggtccttcggctgacagaaattggggccttgccgcaattataagagacgttgaa |
38634902 |
T |
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| Q |
507 |
ggtgttgtttt |
517 |
Q |
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| T |
38634903 |
ggtgttgtttt |
38634913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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