View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6840_high_2 (Length: 324)
Name: NF6840_high_2
Description: NF6840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6840_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 23669863 - 23670147
Alignment:
| Q |
20 |
attaggatcagcacaatataagaaattgtggttatcctttttattaactcaccctaaccctaacnnnnnnngtgtatatatttatgaaagcagagaacgt |
119 |
Q |
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| T |
23669863 |
attaggatcagcacaatataagaaattgtggttatcctttttatcaactcaccctaaccctaacaaaaaaagtgtatatatttatgaaagcagagaacgt |
23669962 |
T |
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| Q |
120 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctcttatcttcgttaatctagttg |
219 |
Q |
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| T |
23669963 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctcttatcttcgttaatctagttg |
23670062 |
T |
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| Q |
220 |
tgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgttgtctcttttatat |
304 |
Q |
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| T |
23670063 |
tgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgttgtctcttttatat |
23670147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 24042139 - 24042423
Alignment:
| Q |
20 |
attaggatcagcacaatataagaaattgtggttatcctttttattaactcaccctaaccctaacnnnnnnngtgtatatatttatgaaagcagagaacgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24042139 |
attaggatcagcacaatataagaaattgtggttatcctttttatcaactcaccctaaccctaacaaaaaaagtgtatatatttatgaaagcagagaacgt |
24042238 |
T |
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| Q |
120 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctcttatcttcgttaatctagttg |
219 |
Q |
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| T |
24042239 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctcttatcttcgttaatctagttg |
24042338 |
T |
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| Q |
220 |
tgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgttgtctcttttatat |
304 |
Q |
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| T |
24042339 |
tgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgttgtctcttttatat |
24042423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 290
Target Start/End: Original strand, 23685678 - 23685852
Alignment:
| Q |
120 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctc-------ttatcttcgttaat |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||| |||||| |||| |||||||||| ||| |
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| T |
23685678 |
ggttagaagcctcacc---ggtgaacttggcagtgatcgtctttactctgattggaatggtttgtaacttccttttctcttatctcttatcttcgtgaat |
23685774 |
T |
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| Q |
213 |
ctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgt |
290 |
Q |
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| T |
23685775 |
ctagttgtgcttattagattagggttttctatttatacagtatgaatagctattgaaacgctgggttttagggtttgt |
23685852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 290
Target Start/End: Original strand, 24057915 - 24058089
Alignment:
| Q |
120 |
ggttagaagcctcactactggtgaacttggcagtgatcgtctttactcttactgtgatggtttgtatattccttctctc-------ttatcttcgttaat |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||| |||||| |||| |||||||||| ||| |
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| T |
24057915 |
ggttagaagcctcacc---ggtgaacttggcagtgatcgtctttactctgattggaatggtttgtaacttccttttctcttatctcttatcttcgtgaat |
24058011 |
T |
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| Q |
213 |
ctagttgtgcttaatagattagggttttctatttttatagtctgaatagttattgaaacactgggttttagggtttgt |
290 |
Q |
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||||||||||||| |||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
24058012 |
ctagttgtgcttattagattagggttttctatttatacagtatgaatagctattgaaacgctgggttttagggtttgt |
24058089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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