View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6840_high_3 (Length: 283)
Name: NF6840_high_3
Description: NF6840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6840_high_3 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29273392 - 29273157
Alignment:
| Q |
1 |
cagccgcgtgcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29273392 |
cagccgcgtgcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgcttcttgataatggatctgatgatgggatc |
29273293 |
T |
|
| Q |
101 |
catatggttggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29273292 |
catatggttggaatttatgggattggtggcttgggtaaatcaacccttgcaagagcaatctataatttttttgctgatcaatttgaagatttatgttttc |
29273193 |
T |
|
| Q |
201 |
ttcatgatgtgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29273192 |
ttcatgatgtgagagagaattcagctaaaaataact |
29273157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 38)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 26623906 - 26624134
Alignment:
| Q |
8 |
gtgcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatgg |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26623906 |
gtgcccttacatgttgctaaataccctgttggattacagtctcaactacaacaagtgaaatcacttcttgataatggatctgatgatggggtccatatgg |
26624005 |
T |
|
| Q |
108 |
ttggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatga |
207 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
26624006 |
ttggaatgtatgggattggaggcttgggcaaatcaacacttgcaagagcaatctataactttgttgctgatcaatttgaaggtttatgttttcttcatga |
26624105 |
T |
|
| Q |
208 |
tgtgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
26624106 |
tgtgagagagaattcagctcaaaataact |
26624134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 26729883 - 26730111
Alignment:
| Q |
8 |
gtgcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatgg |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26729883 |
gtgcccttacatgttgctaaataccctgttggattacagtctcaactacaacaagtgaaatcacttcttgataatggatctgatgatggggtccatatgg |
26729982 |
T |
|
| Q |
108 |
ttggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatga |
207 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
26729983 |
ttggaatgtatgggattggaggcttgggcaaatcaacacttgcaagagcaatctataactttgttgctgatcaatttgaaggtttatgttttcttcatga |
26730082 |
T |
|
| Q |
208 |
tgtgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
26730083 |
tgtgagagagaattcagctcaaaataact |
26730111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 27698131 - 27697905
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27698131 |
gcccttacatgttgccaattaccctgttggattacagtctcaagtacaaagagtgaaatcaattcttgataatggatctgatgatggggtccatatggtt |
27698032 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
27698031 |
ggaatttttgggattggaggcttgggaaaatcaacacttgcaagagcaatctataatttggttgctgatcaatttgaaggtttatgttttcttcataatg |
27697932 |
T |
|
| Q |
210 |
tgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
27697931 |
tgagaatgaattcagctaaaaataact |
27697905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 26803083 - 26803309
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||||||||||| || |||||||||||||| || |||| ||||||| |||| |||||| |||||||| | ||| ||||||||||| ||||||||||| |
|
|
| T |
26803083 |
gcccttacatgttgctaattaccctgttggattgcactctcgagtacaagaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggtt |
26803182 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26803183 |
ggaatttatgggattggaggcttgggtaaatcagcacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttcatgatg |
26803282 |
T |
|
| Q |
210 |
tgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
26803283 |
tgagagagaattcagctcaaaataact |
26803309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 27705948 - 27705727
Alignment:
| Q |
11 |
cccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttg |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| |||||||| | ||| ||||||||||| |||||||||||| |
|
|
| T |
27705948 |
cccttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcacttcttgatgagggacctgatgatggggtccatatggttg |
27705849 |
T |
|
| Q |
111 |
gaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgt |
210 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27705848 |
gaatttttggcattggaggcttgggtaaatcaacacttgcaagagcaatttataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgt |
27705749 |
T |
|
| Q |
211 |
gagagagaattcagctaaaaat |
232 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
27705748 |
gagagagaattcagctcaaaat |
27705727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 27679587 - 27679813
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||||| ||||||||| ||||||||||| |
|
|
| T |
27679587 |
gcccttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggatccgatgatggggtccatatggtt |
27679686 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| ||||||||| ||||||||| || |||||||| |||| || ||||||||||||||||| |
|
|
| T |
27679687 |
ggaatttatggcattggaggtttggggaaatcaacacttgcaagacaaatctataattttgttgcagatcaattcgaaggttcatgttttcttcatgatg |
27679786 |
T |
|
| Q |
210 |
tgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
27679787 |
tgagagagaattcagctcaaaataact |
27679813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 27427155 - 27426941
Alignment:
| Q |
12 |
ccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttgg |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||| ||||||||||| ||||||||||||| |
|
|
| T |
27427155 |
ccttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttgg |
27427056 |
T |
|
| Q |
112 |
aatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| | | || |
|
|
| T |
27427055 |
aatttatgggattggaggctcaggtaaatcaacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttgaacaagtc |
27426956 |
T |
|
| Q |
212 |
agagagaattcagct |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27426955 |
agagagaattcagct |
27426941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 31285194 - 31285422
Alignment:
| Q |
8 |
gtgcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatgg |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| || | |||||||||| |||| | |||||||||| | | || || | ||| | || |||| |
|
|
| T |
31285194 |
gtgcccttacatgttgccaattaccctgttggatttaagtttcgaatacaacaagtgaaattgcttcttgataaggaaactaataaaggggtacacatgg |
31285293 |
T |
|
| Q |
108 |
ttggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatga |
207 |
Q |
| |
|
| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||||||||||| | ||||||||||||||||| |
|
|
| T |
31285294 |
taggactttatgggataggaggcttgggtaaatcaacacttgcaagagcaatctataattttattggtgatcaatttgacggattatgttttcttcatga |
31285393 |
T |
|
| Q |
208 |
tgtgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31285394 |
tgtgagagagaattcagctaaaaataact |
31285422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 27592566 - 27592340
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||||||||| ||||| ||||||||||| |
|
|
| T |
27592566 |
gcccttaaatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaggatctgatcatggggtccatatggtt |
27592467 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| | |||||| ||||| ||||||||||||||| | |||||||||| | ||| |
|
|
| T |
27592466 |
ggaatttatgggattggaggcttgggaaaatcaacacttgcgaaagcaatttataactttattgctgatcaatttgaatgctcatgttttcttgaaaatg |
27592367 |
T |
|
| Q |
210 |
tgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||| ||||| ||||||| |||||||| |
|
|
| T |
27592366 |
tgaaagagagttcagcttcaaataact |
27592340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 27677164 - 27676939
Alignment:
| Q |
11 |
cccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttg |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |||||||||| | |||||| |||||||| | ||||||||| ||||| |||||||||||| |
|
|
| T |
27677164 |
cccttacatgttgccacttaccctgttggattgcagtctcgagtacaacaaatgaaatcgcttcttgatgaaggatctgatcatggggtccatatggttg |
27677065 |
T |
|
| Q |
111 |
gaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgt |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| | |||||| ||||| ||||||||||||||| | |||||||||| | |||| |
|
|
| T |
27677064 |
gaatttatgggattggaggcttgggaaaatcaacacttgcgaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgt |
27676965 |
T |
|
| Q |
211 |
gagagagaattcagctaaaaataact |
236 |
Q |
| |
|
|| ||||| ||||||| |||||||| |
|
|
| T |
27676964 |
gaaagagagttcagcttcaaataact |
27676939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 27610664 - 27610452
Alignment:
| Q |
11 |
cccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttg |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||| |||||||| | ||||||||||||| |||| ||||| | |
|
|
| T |
27610664 |
cccttacatgttgccaattaccctgttggattgcagtctcaagtacaagaagtgaaatcgcttcttgatgaaagatctgatgatggagtccacatggtag |
27610565 |
T |
|
| Q |
111 |
gaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgt |
210 |
Q |
| |
|
|| ||||||| | |||||| |||||||||||||| ||||||| |||||| ||||| ||||||||||||||| | |||||||||| | |||| |
|
|
| T |
27610564 |
gactttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgt |
27610465 |
T |
|
| Q |
211 |
gagagagaattca |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27610464 |
gagagagaattca |
27610452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 27718043 - 27717831
Alignment:
| Q |
11 |
cccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttg |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||||||||||||| |||| ||||| | |
|
|
| T |
27718043 |
cccttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaagatctgatgatggagtccacatggtag |
27717944 |
T |
|
| Q |
111 |
gaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgt |
210 |
Q |
| |
|
|| ||||||| | |||||| |||||||||||||| ||||||| |||||| ||||| ||||||||||||||| | |||||||||| | |||| |
|
|
| T |
27717943 |
gactttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgt |
27717844 |
T |
|
| Q |
211 |
gagagagaattca |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27717843 |
gagagagaattca |
27717831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 28786875 - 28787091
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | |||||||||||||| ||| ||||| |
|
|
| T |
28786875 |
gcccttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaggatctgatgatggagtccgcatggta |
28786974 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||| | |||||||||| | ||| |
|
|
| T |
28786975 |
ggactttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatg |
28787074 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28787075 |
tgagagagaattcagct |
28787091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 26656606 - 26656818
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||| |||| | |||||||||| |||||| | |||| | | | ||||| ||| |
|
|
| T |
26656606 |
ttacatgttgccaaataccctgttggattagagtctcgagtacaacaagtgaaattgcttcttgataagggatctaaggatgaggttctcatggtaggac |
26656705 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
||||||| | ||||||| ||||||||||||| ||||| | |||||| ||||| |||||||||||||||| | ||||||||||||| |||| || |
|
|
| T |
26656706 |
tttatggtactggaggcatgggtaaatcaacacttgccaaagcaatttataattttgtcgctgatcaatttgaaggtgtatgttttcttcacaatgtcag |
26656805 |
T |
|
| Q |
214 |
agagaattcagct |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26656806 |
agagaattcagct |
26656818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 26762577 - 26762789
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||| |||| | |||||||||| |||||| | |||| | | | ||||| ||| |
|
|
| T |
26762577 |
ttacatgttgccaaataccctgttggattagagtctcgagtacaacaagtgaaattgcttcttgataagggatctaaggatgaggttctcatggtaggac |
26762676 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
||||||| | ||||||| ||||||||||||| ||||| | |||||| ||||| |||||||||||||||| | ||||||||||||| |||| || |
|
|
| T |
26762677 |
tttatggtactggaggcatgggtaaatcaacacttgccaaagcaatttataattttgtcgctgatcaatttgaaggtgtatgttttcttcacaatgtcag |
26762776 |
T |
|
| Q |
214 |
agagaattcagct |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26762777 |
agagaattcagct |
26762789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 28792996 - 28793212
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | |||||||||||||| ||| ||||| |
|
|
| T |
28792996 |
gcccttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaaggatctgatgatggagtccgcatggta |
28793095 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||| | |||||||||| | ||| |
|
|
| T |
28793096 |
ggactttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatg |
28793195 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
28793196 |
tgagagagagttcagct |
28793212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 26647120 - 26647342
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| | | || ||||||| |||| | |||||||||| | ||||||||| ||| |||||||||| ||| |
|
|
| T |
26647120 |
ttacatgtagccaaataccctgttggattagagtcccgattagaacaagtgaaattgcttcttgataaagaatctgatgaaggggtccatatggtaggac |
26647219 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
||||||| | |||||| |||||||||||||| ||||| | ||| || ||||| |||||||||||||||| | |||| ||||||||| |||| || |
|
|
| T |
26647220 |
tttatggtactggaggtttgggtaaatcaacacttgccaaagcgatttataattttgttgctgatcaatttgaaggtgtatgctttcttcataatgtcag |
26647319 |
T |
|
| Q |
214 |
agagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
26647320 |
agagaattcagctcataataact |
26647342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 26753088 - 26753310
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| | | || ||||||| |||| | |||||||||| | ||||||||| ||| |||||||||| ||| |
|
|
| T |
26753088 |
ttacatgtagccaaataccctgttggattagagtcccgattagaacaagtgaaattgcttcttgataaagaatctgatgaaggggtccatatggtaggac |
26753187 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
||||||| | |||||| |||||||||||||| ||||| | ||| || ||||| |||||||||||||||| | |||| ||||||||| |||| || |
|
|
| T |
26753188 |
tttatggtactggaggtttgggtaaatcaacacttgccaaagcgatttataattttgttgctgatcaatttgaaggtgtatgctttcttcataatgtcag |
26753287 |
T |
|
| Q |
214 |
agagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
26753288 |
agagaattcagctcataataact |
26753310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 26824460 - 26824674
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | |||||||||||| ||||| |||||||||| | ||||||||||| | |||||||||| ||| |
|
|
| T |
26824460 |
ttacatgttgccaaatacccggttggattacagtcccgagtacaacaagtgaaatctcttcttgataacgaatctgatgatgtggtccatatggtaggac |
26824559 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
|||| || |||||||| || ||||||||||| ||||||| ||||| | ||| |||||| ||||||||| ||| ||||||||| | | ||||| |
|
|
| T |
26824560 |
tttacggtattggaggtttaggtaaatcaacacttgcaaaagcaacttttaattctattgctgataaatttgaagttttttgttttcttgagaacgtgag |
26824659 |
T |
|
| Q |
214 |
agagaattcagctaa |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26824660 |
agagaattcagctaa |
26824674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 27604249 - 27604033
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||| ||||||| |||||||||||| ||||| |||||||| | ||||||||||||| |||| ||||| |
|
|
| T |
27604249 |
gcccttacatgttgccaattatcctattggattgcagtctcgagtacaacaagtgaaatctcttcttgatgaaagatctgatgatggagtccacatggta |
27604150 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | |||||| |||||||||||||| ||||||| |||||| ||||| ||||||||||||||| | |||||||||| | ||| |
|
|
| T |
27604149 |
ggactttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatg |
27604050 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27604049 |
tgagagagaattcagct |
27604033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 27337635 - 27337424
Alignment:
| Q |
15 |
tacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaat |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||||| |||| | |||||||| | | ||||||||| ||| || | ||||| ||| | |
|
|
| T |
27337635 |
tacacgttgccaaataccctgttggattacagtcccgagtacaacaagtaaaattgcttcttgatgaggaatctgatgaaggggtcaacatggtaggact |
27337536 |
T |
|
| Q |
115 |
ttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgaga |
214 |
Q |
| |
|
|||||| | | |||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||||| |||| ||||||||| |||| ||| |
|
|
| T |
27337535 |
ttatggtactagaggcttgggaaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggagtatgctttcttcataatgttaga |
27337436 |
T |
|
| Q |
215 |
gagaattcagct |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27337435 |
gagaattcagct |
27337424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 27398375 - 27398164
Alignment:
| Q |
15 |
tacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaat |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||||| |||| | |||||||| | | ||||||||| ||| || | ||||| ||| | |
|
|
| T |
27398375 |
tacacgttgccaaataccctgttggattacagtcccgagtacaacaagtaaaattgcttcttgatgaggaatctgatgaaggggtcaacatggtaggact |
27398276 |
T |
|
| Q |
115 |
ttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgaga |
214 |
Q |
| |
|
|||||| | | |||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||||| |||| ||||||||| |||| ||| |
|
|
| T |
27398275 |
ttatggtactagaggcttgggaaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggagtatgctttcttcataatgttaga |
27398176 |
T |
|
| Q |
215 |
gagaattcagct |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27398175 |
gagaattcagct |
27398164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 25492860 - 25492651
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||||| || |||| | |||| ||| | | |||||| |||| | |||| ||||| ||| |
|
|
| T |
25492860 |
ttacatgttgccaaataccctgttggattacaatcccgagtacaacacgtgaaattgcttctagatgaggtatctgaggatgagttccacatggtaggac |
25492761 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
||||||| | ||||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
25492760 |
tttatggtactggaggcttaggtaaatcaacacttgcaaaatcaatctataacttcattgctgatcaatttgaaggtttatgttttctaggagatgtgag |
25492661 |
T |
|
| Q |
214 |
agagaattca |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
25492660 |
agagaattca |
25492651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 26884711 - 26884933
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| | |||||||||| | |||| | |||||||||| | |||| | || ||| | || ||||| |||| |
|
|
| T |
26884711 |
ttacatgtagccaaataccctgttggattacagtaccgagtacaacaattaaaattgcttcttgataaggaatctaacgaaggggtacacatggtaggaa |
26884810 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||| | |||||||||| ||| | || || |
|
|
| T |
26884811 |
tttatggtactggaggcttgggtaaatcaacacttgcaaaagcaatttataattatgttgctgatcaatttgaatgtgtatgttttctgcataaagtcag |
26884910 |
T |
|
| Q |
214 |
agagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||||| || | ||||||| |
|
|
| T |
26884911 |
ggagaattcaactcataataact |
26884933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 28781741 - 28781954
Alignment:
| Q |
13 |
cttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttgga |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | |||||||||||| |||||| |||||| | | |||| |||| |||| || ||||| ||| |
|
|
| T |
28781741 |
cttacatgttgccaattaccctgttggattacagtcccgagtacaacaagtgaaatcgcttcttggtgaaggatatgataatggagtcaggatggtagga |
28781840 |
T |
|
| Q |
113 |
atttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtga |
212 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||| || |||| | ||||| ||||||||||||||| | |||||||||| | |||||| |
|
|
| T |
28781841 |
ctttatggtactggaggcttgggtaaatcaacacttgtaaaagcagtttataacttaattgctgatcaatttgaatgctcatgttttcttgaaaatgtga |
28781940 |
T |
|
| Q |
213 |
gagagaattcagct |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28781941 |
gagagaattcagct |
28781954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 25580372 - 25580572
Alignment:
| Q |
23 |
gccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaatttatggga |
122 |
Q |
| |
|
|||||||||||||||||||||||||| | | || ||||||| |||| | ||||||| | || ||||| |||| | |||| ||||| ||| ||||||| | |
|
|
| T |
25580372 |
gccaaataccctgttggattacagtcccgaatagaacaagtgaaattgcttcttgacatgggctctgaggatgtggtccacatggtaggactttatggta |
25580471 |
T |
|
| Q |
123 |
ttggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattc |
222 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| | ||||| |||||||||||||||| | |||||||||||||| |||| ||||||| ||| |
|
|
| T |
25580472 |
ctggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagatttc |
25580571 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
25580572 |
a |
25580572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 26862230 - 26862430
Alignment:
| Q |
23 |
gccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaatttatggga |
122 |
Q |
| |
|
||||||||||||||||||||| |||| | |||| ||||||| |||| | ||||||||| | ||||||||| ||| | || ||||| ||| ||||||| | |
|
|
| T |
26862230 |
gccaaataccctgttggattaaagtcccgagtagaacaagtgaaattgcttcttgatatggaatctgatgaaggggtacacatggtaggactttatggta |
26862329 |
T |
|
| Q |
123 |
ttggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattc |
222 |
Q |
| |
|
||||||| |||| |||||||| ||||||| |||||| ||||| || ||||||||||||| | |||||||||||||| | || ||||||||||| |
|
|
| T |
26862330 |
ctggaggcatggggaaatcaacacttgcaaaagcaatttataattttgttgccgatcaatttgaaggtgtatgttttcttcataaagttagagagaattc |
26862429 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
26862430 |
a |
26862430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 27530846 - 27530634
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| | ||||||||| || ||| | ||||||| | ||||||||||| | |||| ||||| |
|
|
| T |
27530846 |
gcccttagatgttgccaaatatcctgttggattacagtcccgagtacaacatgtgaaagggcatcttgatgaaaaatctgatgatgaggtccacatggta |
27530747 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | ||||||| | ||||||||||| ||||||| |||||| ||||| |||||||||||||||| |||||||||||| | ||| |
|
|
| T |
27530746 |
ggactttatggtactggaggcataggtaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaagttttatgttttctagaaaatg |
27530647 |
T |
|
| Q |
210 |
tgagagagaattc |
222 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
27530646 |
tgagagtgaattc |
27530634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 25539188 - 25539393
Alignment:
| Q |
18 |
atgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaattta |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | | || ||||||| |||| | ||||||| || ||||| |||| | ||| ||||| ||| |||| |
|
|
| T |
25539188 |
atgtggccaaataccctgttggattacagtccccaatagaacaagtgaaattgcttcttgacttgggctctgaggatgaggtccgcatggtaggacttta |
25539287 |
T |
|
| Q |
118 |
tgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagag |
217 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||||||| |||| | | ||| |||||||||||||||| | |||||||||||||| |||| |||||| |
|
|
| T |
25539288 |
tggtactggaggcatgggtaaatcaacacttgcaaaagcagtttttaattttgttgctgatcaatttgaagttgtatgttttcttcataatgtcagagag |
25539387 |
T |
|
| Q |
218 |
aattca |
223 |
Q |
| |
|
|||||| |
|
|
| T |
25539388 |
aattca |
25539393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 26143513 - 26143718
Alignment:
| Q |
18 |
atgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaattta |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | | || || |||| |||| | ||||||| | || ||||| |||| | ||| ||||| ||| ||| |
|
|
| T |
26143513 |
atgtagccaaataccctgttggattacagtcccgaatagaagaagtgaaattgcttcttgacatgggctctgaggatgaggtccgcatggtaggactttt |
26143612 |
T |
|
| Q |
118 |
tgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagag |
217 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||||||| |||| | ||||| |||||||||||||||| | |||||||||||||| |||| |||||| |
|
|
| T |
26143613 |
tggtactggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagag |
26143712 |
T |
|
| Q |
218 |
aattca |
223 |
Q |
| |
|
|||||| |
|
|
| T |
26143713 |
aattca |
26143718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 25483709 - 25483909
Alignment:
| Q |
23 |
gccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaatttatggga |
122 |
Q |
| |
|
|||||||||||||||||||||||||| | | || ||||||| |||| | ||||||| | || ||||| |||| | ||| ||||| ||| ||| ||| | |
|
|
| T |
25483709 |
gccaaataccctgttggattacagtcccgaatagaacaagtgaaattgcttcttgacatgggctctgaggatgaggtccgcatggtaggactttttggta |
25483808 |
T |
|
| Q |
123 |
ttggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattc |
222 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| | | ||| |||||||||||||||| | |||||||||||||| |||| ||||||||||| |
|
|
| T |
25483809 |
ctggaggcatgggtaaatcaacacttgcaaaagcagtttttaattttcttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattc |
25483908 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
25483909 |
a |
25483909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 27215093 - 27215315
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||| |||||||||| |||| | ||||||| || |||||| | || | | |||| ||||| ||| |
|
|
| T |
27215093 |
ttacatgttgccaaacaccctgttggattacatacccaaatacaacaagtaaaattgcttcttgacaagggatctaaggaagaggtccacatggtaggac |
27215192 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
|| |||| ||||||| ||||||||||||| ||||||| |||||| | ||| |||||||| ||||||| || || |||||| | ||||||| |
|
|
| T |
27215193 |
ttcatggagctggaggcatgggtaaatcaacacttgcaaaagcaatttttaatttcattgctgatcagtttgaaggttcatattttctagaagatgtgaa |
27215292 |
T |
|
| Q |
214 |
agagaattcagctaaaaataact |
236 |
Q |
| |
|
|||||||||| || |||||||| |
|
|
| T |
27215293 |
agagaattcaactttaaataact |
27215315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 26056572 - 26056772
Alignment:
| Q |
23 |
gccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaatttatggga |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| | | || ||||||| |||| | ||||||| | || ||||| ||| | ||| ||||| ||||||| ||| | |
|
|
| T |
26056572 |
gccaaataccctgttggattgcagtcccgaatagaacaagtgaaattgcttcttgacatgggctctgagaatgaggtccgcatggtaggaatttttggta |
26056671 |
T |
|
| Q |
123 |
ttggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattc |
222 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||| | | ||| |||||||||||||||| | |||||||||||||| |||| ||||||||||| |
|
|
| T |
26056672 |
ccggaggcatgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattc |
26056771 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
26056772 |
a |
26056772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 26076542 - 26076742
Alignment:
| Q |
23 |
gccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaatttatggga |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| | | || ||||||| |||| | ||||||| | || ||||| ||| | ||| ||||| ||||||| ||| | |
|
|
| T |
26076542 |
gccaaataccctgttggattgcagtcccgaatagaacaagtgaaattgcttcttgacatgggctctgagaatgaggtccgcatggtaggaatttttggta |
26076641 |
T |
|
| Q |
123 |
ttggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattc |
222 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||| | | ||| |||||||||||||||| | |||||||||||||| |||| ||||||||||| |
|
|
| T |
26076642 |
ccggaggcatgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattc |
26076741 |
T |
|
| Q |
223 |
a |
223 |
Q |
| |
|
| |
|
|
| T |
26076742 |
a |
26076742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 28140275 - 28140391
Alignment:
| Q |
113 |
atttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtga |
212 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||| |||||| |||||| ||||| || |||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
28140275 |
atttatgggatgggagggtcgggtaaaacaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtga |
28140374 |
T |
|
| Q |
213 |
gagagaattcagctaaa |
229 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
28140375 |
gagaaatttcagctaaa |
28140391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 25511645 - 25511742
Alignment:
| Q |
126 |
gaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattca |
223 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||| | | ||| ||||||||||||||| | |||||||||||||| |||| |||||||||||| |
|
|
| T |
25511645 |
gaggcatgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaagtgtatgttttcttcataatgtcagagagaattca |
25511742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 29843443 - 29843313
Alignment:
| Q |
99 |
tccatatggttggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttt |
198 |
Q |
| |
|
|||| ||||| || |||||||| ||||| || ||||||||| |||| ||||| ||||||| ||||| |||||| |||||||| ||| ||||| |
|
|
| T |
29843443 |
tccagatggtggggatttatggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttt |
29843344 |
T |
|
| Q |
199 |
tcttcatgatgtgagagagaattcagctaaa |
229 |
Q |
| |
|
|||||| || | |||||| | |||||||||| |
|
|
| T |
29843343 |
tcttcacgacgggagagaaagttcagctaaa |
29843313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 28186193 - 28186249
Alignment:
| Q |
173 |
gctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattcagctaaa |
229 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| || | |||||||||||| |
|
|
| T |
28186193 |
gctgatcaatttgatgatttgtgttttcttcacgatgtaaggggaaattcagctaaa |
28186249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 267885 - 267659
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
267885 |
gcccttacatgttgccaattaccctgttggattatggtctcaagtacaacaagtgaaattgcttcttgataatggatctgatgatggggtccatatggtt |
267786 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
267785 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataattttattgctgatcaatttgaaggattatgttttcttcatgatg |
267686 |
T |
|
| Q |
210 |
tgagagagaattcagctaaaaataact |
236 |
Q |
| |
|
||||||| |||||||||| || ||||| |
|
|
| T |
267685 |
tgagagaaaattcagctataagtaact |
267659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 28163916 - 28163707
Alignment:
| Q |
14 |
ttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttggaa |
113 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||| | |||| ||||| |||| |||||||| | |||| ||||| ||| |
|
|
| T |
28163916 |
ttacatgttgcaaaatatcctgttggattacaatctcaagtacaacaagtgaaattgcttctcgataagggatatgatgatgaggtccacatggtaggac |
28163817 |
T |
|
| Q |
114 |
tttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtgag |
213 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
28163816 |
tttatgatactggaggcttgggtaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgag |
28163717 |
T |
|
| Q |
214 |
agagaattca |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
28163716 |
agagaattca |
28163707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 28127217 - 28127007
Alignment:
| Q |
13 |
cttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttgga |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||| || | | |||| ||||| |||| |||||||| | |||| ||||| ||| |
|
|
| T |
28127217 |
cttacatgttgccaaatatcctgttggattacaggaccaagtacaacaagtgaatttgcttctcgataagggatatgatgatgaggtccacatggtagga |
28127118 |
T |
|
| Q |
113 |
atttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtga |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
28127117 |
ctttatggtattggaggcttgggtaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtga |
28127018 |
T |
|
| Q |
213 |
gagagaattca |
223 |
Q |
| |
|
|||||| |||| |
|
|
| T |
28127017 |
gagagatttca |
28127007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 60208 - 60422
Alignment:
| Q |
12 |
ccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttgg |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||| ||||||||||| ||||||||||||| |
|
|
| T |
60208 |
ccttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttgg |
60307 |
T |
|
| Q |
112 |
aatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| | | || |
|
|
| T |
60308 |
aatttatgggattggaggctcaggtaaatcaacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttgaacaagtc |
60407 |
T |
|
| Q |
212 |
agagagaattcagct |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
60408 |
agagagaattcagct |
60422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 18074400 - 18074614
Alignment:
| Q |
12 |
ccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttgg |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||| ||||||||||| ||||||||||||| |
|
|
| T |
18074400 |
ccttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgagggacctgatgatggggtccatatggttgg |
18074499 |
T |
|
| Q |
112 |
aatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| | | || |
|
|
| T |
18074500 |
aatttatgggattggaggctcaggtaaatcaacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttgaacaagtc |
18074599 |
T |
|
| Q |
212 |
agagagaattcagct |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18074600 |
agagagaattcagct |
18074614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 18698941 - 18698725
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||| || |||||||||| |||||||||||||| ||| ||| | |
|
|
| T |
18698941 |
gcccttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaagcgcttcttgataaaggatctgatgatggagtccgcatgtta |
18698842 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||||||| ||||| | |||||| ||||| ||||||||||||||| | |||||||||| | ||| |
|
|
| T |
18698841 |
ggactttatggcattggaggcatgggtaaatcaacacttgcgaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatg |
18698742 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18698741 |
tgagagagaattcagct |
18698725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 18679101 - 18678885
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||| |||||||| | ||||| ||||||| ||| ||||| |
|
|
| T |
18679101 |
gcccttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagtgaaatcgcttcttgatgaatgatcttatgatggagtccgcatggta |
18679002 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| ||||||||| ||||||||| ||| ||||||| |||||| ||||| ||||||||||||||| | |||||||||| | ||| |
|
|
| T |
18679001 |
ggactttatggcattggaggcatgggtaaattaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatg |
18678902 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18678901 |
tgagagagaattcagct |
18678885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 18723626 - 18723410
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||| |||||||||||| |||||| |||||||||| |||||| ||| ||| ||| ||| | |
|
|
| T |
18723626 |
gcccttacatgttgccacttaccctgttgggttgcagtctcgagtacaacaagtgaaatcgcttcttgataaaggatctaatggtggagtccgcatgata |
18723527 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| ||||||||| |||| |||||||| ||||||| || ||| ||||| ||||||||||||||| | |||||||||| | | | |
|
|
| T |
18723526 |
ggactttatggtattggaggcatgggaaaatcaacacttgcaaaaggaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaacg |
18723427 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18723426 |
tgagagagaattcagct |
18723410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 18731045 - 18730829
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||| |||||||||||| |||||| |||||||||| |||||| ||| ||| ||| ||| | |
|
|
| T |
18731045 |
gcccttacatgttgccatttaccctgttgggttgcagtctcgagtacaacaagtgaaatcgcttcttgataaaggatcttatggtggagtccgcatgata |
18730946 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| ||||||||| |||| |||||||| ||||| | || ||| ||||| ||||||||||||||| | |||||||||| | ||| |
|
|
| T |
18730945 |
ggactttatggtattggaggcatgggaaaatcaacacttgctaaagtaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatg |
18730846 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18730845 |
tgagagagaattcagct |
18730829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 18655018 - 18654805
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||||| |||||||||||| |||||| |||||||||| |||||||||| ||| ||| ||| | |
|
|
| T |
18655018 |
gcccttacatgctgccagttaccctgttgggttgcagtctcgagtacaacaagtgaaatcgcttcttgataaaggatctgatggtggagtccgcatgata |
18654919 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| ||||||||| |||| |||||||| ||||||| | |||| |||| ||||||||||||||| | |||||||||| | ||| |
|
|
| T |
18654918 |
ggactttatggtattggaggcatgggaaaatcaacacttgcaaaatcaattaataattgtattgctgatcaatttgaatgctcatgttttcttgaaaatg |
18654819 |
T |
|
| Q |
210 |
tgagagagaattca |
223 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
18654818 |
tgagagaaaattca |
18654805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 8124 - 8340
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||| |||||||| | |||||||||||||| |||| ||||| |
|
|
| T |
8124 |
gcccttacatgttgccaattaccctgttggattacagtctcgagtacaacatgtgaaatcgcttcttgatgaaggatctgatgatggagtccacatggta |
8223 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||| | |||||||||| | ||| |
|
|
| T |
8224 |
ggactttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatg |
8323 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8324 |
tgagagagaattcagct |
8340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 13220 - 13004
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||| |||||||| | |||||||||||||| |||| ||||| |
|
|
| T |
13220 |
gcccttacatgttgccaattaccctgttggattacagtctcgagtacaacatgtgaaatcgcttcttgatgaaggatctgatgatggagtccacatggta |
13121 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||| | |||||||||| | ||| |
|
|
| T |
13120 |
ggactttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatg |
13021 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13020 |
tgagagagaattcagct |
13004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 4257 - 4041
Alignment:
| Q |
10 |
gcccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggtt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||| |||||||| | ||||||||| |||| ||| ||||| |
|
|
| T |
4257 |
gcccttacatgttgccaattaccctgttggattacagtctcgagtacaacatgtgaaatcgcttcttgatgaaggatctgatcatggagcccacatggta |
4158 |
T |
|
| Q |
110 |
ggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatg |
209 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||| |||| || |||||| ||||| |||||| |||||||| | |||||||||| | ||| |
|
|
| T |
4157 |
ggactttatggtactggaggcttgggtaaatcaacacttggaaaagcaatttataattttattgctgatgaatttgaatgctcatgttttcttgaaaatg |
4058 |
T |
|
| Q |
210 |
tgagagagaattcagct |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4057 |
tgagagagaattcagct |
4041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 3083 - 2868
Alignment:
| Q |
11 |
cccttacatgttgccaaataccctgttggattacagtctcaagtacaacaagtcaaatcgtttcttgataatggatctgatgatgggatccatatggttg |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| |||||||||||| |||||| |||||||| | ||||||||||||| |||| ||||| | |
|
|
| T |
3083 |
cccttacatgttgccaattaccctgttggaatgaagtctcgagtacaacaagtgaaatcgcttcttgatgaaagatctgatgatggagtccacatggtag |
2984 |
T |
|
| Q |
111 |
gaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttcttcatgatgt |
210 |
Q |
| |
|
|| ||||||| | |||||| |||||||||||||| ||||||| |||||| ||||| ||||||||||||||| | |||||||||| | |||| |
|
|
| T |
2983 |
gactttatggtactggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgt |
2884 |
T |
|
| Q |
211 |
gagagagaattcagct |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2883 |
gagagagaattcagct |
2868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 16691596 - 16691723
Alignment:
| Q |
102 |
atatggttggaatttatgggattggaggcttgggtaaatcaacccttgcaagagcaatctataannnnnnngctgatcaatttgaagatttatgttttct |
201 |
Q |
| |
|
|||||||||| || |||| |||||||| | |||||| |||| ||||| ||||||| ||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
16691596 |
atatggttgggatccatggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttct |
16691695 |
T |
|
| Q |
202 |
tcatgatgtgagagagaattcagctaaa |
229 |
Q |
| |
|
|||||| |||||||| |||||| ||||| |
|
|
| T |
16691696 |
tcatgacgtgagagaaaattcatctaaa |
16691723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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