View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6840_high_4 (Length: 250)
Name: NF6840_high_4
Description: NF6840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6840_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 12151653 - 12151437
Alignment:
| Q |
15 |
gtgttcttaattgaaatttctgcatgaaacaatggatccaagagtttgactttcaatttttggataaaagttcatcatgatctgaaaaatgatttgatta |
114 |
Q |
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| T |
12151653 |
gtgttcttaattgaaatttctgcatgaaacaatggatccaagagtttgactttcaatttttggataaaagttcatcatgatctgaaaaatgatttgatta |
12151554 |
T |
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| Q |
115 |
ttagagaaattattcatactaagttggtctgatctacatatttattatgcataaagcttgttaaacaagtataattttcttttctaattgtattagagaa |
214 |
Q |
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| T |
12151553 |
ttagagaaattattcatactaagttggtctgatctacata-ttattatgcataaagcttgttaaataagtataattttcttttctaattgtattagagaa |
12151455 |
T |
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| Q |
215 |
tcatttagtcaacttttt |
232 |
Q |
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| T |
12151454 |
tcatttagtcaacttttt |
12151437 |
T |
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