View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6840_low_2 (Length: 464)
Name: NF6840_low_2
Description: NF6840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6840_low_2 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 80 - 421
Target Start/End: Original strand, 46586 - 46927
Alignment:
| Q |
80 |
gactttgatacggctgagaagttttttggtgtaaaggtatatacaacgccaaaatgcggttttccaccgatcaaatgatttatactccttatatttatct |
179 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46586 |
gactttgatacggctgggacgttttttggtgtaaaggtatatacgacgccaaaatgcgattttccaccgatcaaatgatttatactccttatatttatct |
46685 |
T |
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| Q |
180 |
tgcacaatcaattttgaaaagtaattagttcttgttgtttcttctattatttatcaagatttactcctaacctttgttccgcaaagaaacttgacaggtg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46686 |
tgcacaatcaattttgaaaagtaattagttcttgttgtttcttctattatttatcgagatttactcctaacctttgttctgcaaagaaacttgacaggta |
46785 |
T |
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| Q |
280 |
acactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgccctaagtttgatcaaatttgtt |
379 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46786 |
actctcttaaggaaaataatacacggctgatggttaaataaagatcacgtaggttggatatgtaccacataaacttgccctaagtttgatcaaatttgtt |
46885 |
T |
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| Q |
380 |
acgatttgaatattgttttcaatttgtgttttttaattgcta |
421 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46886 |
acgatttgaatattgttttcaatttgtgttttttatttgcta |
46927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 80 - 411
Target Start/End: Original strand, 12325005 - 12325336
Alignment:
| Q |
80 |
gactttgatacggctgagaagttttttggtgtaaaggtatatacaacgccaaaatgcggttttccaccgatcaaatgatttatactccttatatttatct |
179 |
Q |
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|||||||||||||||| || ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325005 |
gactttgatacggctgggacgttttttggtgtaaaggcatatacgacgccaaaatgcgattttccaccgatcaaatgatttatactccttatatttatct |
12325104 |
T |
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| Q |
180 |
tgcacaatcaattttgaaaagtaattagttcttgttgtttcttctattatttatcaagatttactcctaacctttgttccgcaaagaaacttgacaggtg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
12325105 |
tgcacaatcaattttgaaaagtaattagttcttgttgtctcttctattatttatcgagatttactcctaacctttcttctgcaaagaaacttgacaggtg |
12325204 |
T |
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| Q |
280 |
acactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgccctaagtttgatcaaatttgtt |
379 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12325205 |
acactcttaaggaaaataatatacggctgatggttaaataaagatcacgtgggttggatatgtaccacatagacttgccctaagttggatcaaatttgtt |
12325304 |
T |
|
| Q |
380 |
acgatttgaatattgttttcaatttgtgtttt |
411 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
12325305 |
acgatttaaatattgttttcaatttgtgtttt |
12325336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 158 - 449
Target Start/End: Original strand, 11202742 - 11203033
Alignment:
| Q |
158 |
tttatactccttatatttatcttgcacaatcaattttgaaaagtaattagttcttgttgtttcttctattatttatcaagatttactcctaacctttgtt |
257 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
11202742 |
tttataatccttatatttatcttgcacaatcaattttaaaaagtaattaggttttgttgtttcttatattatttatcgagatttacacctaacctttgtt |
11202841 |
T |
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| Q |
258 |
ccgcaaagaaacttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgc |
357 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11202842 |
ctgcaaagaaacttgacaggtgacacatttaaggaaaataatatacggctgatggtcaaataaagatcacgtgggttggatatgtaccacatagacttgc |
11202941 |
T |
|
| Q |
358 |
cctaagtttgatcaaatttgttacgatttgaatattgttttcaatttgtgttttttaattgctaaatgcctggggcgatcctattatttctt |
449 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||| | ||||||||||||||||||| |
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| T |
11202942 |
cctaagtttgatcaaatttgttacgatttgaatgttgtcttcaatttgtgttttttacttgctaaacgccggcggcgatcctattatttctt |
11203033 |
T |
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Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 20134745 - 20134650
Alignment:
| Q |
266 |
aaacttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgcccta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20134745 |
aaacttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtgggttggatatgtaccacatagacttgcccta |
20134650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 266 - 361
Target Start/End: Original strand, 44357326 - 44357421
Alignment:
| Q |
266 |
aaacttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgcccta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44357326 |
aaacttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtgggttggatatgtaccacatagacttgcccta |
44357421 |
T |
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