View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6840_low_7 (Length: 258)
Name: NF6840_low_7
Description: NF6840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6840_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 31915731 - 31915474
Alignment:
| Q |
1 |
gaccagttagtgaaaatacttagaatcatgataatcttgacatgacgtaaaattaggagctcaactcaatcatacctcaattaagactggtctttgttct |
100 |
Q |
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| T |
31915731 |
gaccagttggtgaaaatacttagaatcatgataatcttggcatgacgtaaaattaggagctcaactcaatcatacctcaattaagactggtctttgttct |
31915632 |
T |
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| Q |
101 |
tttatagcaatttcacgtgcggtgtgaactgtactataaacagctagtgcatcatttccatctactctgatactccatattccataagcttgacctttca |
200 |
Q |
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| T |
31915631 |
tttatagcaatttcacgtgcggtatgaactgcactataaacagcaagtgcatcatttccatctactctgatactccatattccataagcttgacctttca |
31915532 |
T |
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| Q |
201 |
ccacaataccatcacctaaccaaacaccaaaatataagtttctagtttttctaaaatt |
258 |
Q |
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| T |
31915531 |
ccacaataccatcacctaaccaaacaccaaaatataagtttctagtttttctaaaatt |
31915474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 40664335 - 40664084
Alignment:
| Q |
4 |
cagttagtgaaaatacttagaatcatgataatcttgacatgacgtaaaattaggagctcaactcaatcatacctcaattaagactggtctttgttctttt |
103 |
Q |
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||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
40664335 |
cagttagtgaaaatatttagaatcatgataatcttagcttgacgtgaaattaggagctcaagttaatcatacctcgattaagactggtctttgttctttt |
40664236 |
T |
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| Q |
104 |
atagcaatttcacgtgcggtgtgaactgtactataaacagctagtgcatcatttccatctactctgatactccatattccataagcttgacctttcacca |
203 |
Q |
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||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40664235 |
atagcaatttcacgtgcagtatgaactgcactataaacagcaagtgcatcatttccatctactcgaatactccatattccataagcttgacctttcacca |
40664136 |
T |
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| Q |
204 |
caataccatcacctaaccaaacaccaaa-atataagtttctagtttttctaa |
254 |
Q |
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| T |
40664135 |
caataccatcacctaaccaattaccaaacatgtaagtttctagtttttctaa |
40664084 |
T |
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