View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6842_high_2 (Length: 205)
Name: NF6842_high_2
Description: NF6842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6842_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 25914649 - 25914803
Alignment:
| Q |
19 |
aaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagataagtgtcctcataggttaggtaaggt |
118 |
Q |
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| T |
25914649 |
aaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctcataggttaggtaaggt |
25914748 |
T |
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| Q |
119 |
ccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgcttcat |
173 |
Q |
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| T |
25914749 |
ccttgcacagctatttgaccatagtctccaacgtgaaaactgtagattgcttcat |
25914803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 5689965 - 5690122
Alignment:
| Q |
19 |
aaaaacaatttgattgagtttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagataagtgtcctc---ataggttaggtaa |
115 |
Q |
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| T |
5689965 |
aaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatat |
5690064 |
T |
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| Q |
116 |
ggtccttgcacagctatttgaccatagtctccaaaatggaaactgtagattgcttcat |
173 |
Q |
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| T |
5690065 |
ggtccttgaactgctaagtgaccataatcaccaaaatggaaactgtagattgcttcat |
5690122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 6792689 - 6792565
Alignment:
| Q |
52 |
aacaccttcaaaaattccagtaccaccagtcacagttagataagt---gtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctcca |
148 |
Q |
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| T |
6792689 |
aacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatatgaccatactctcca |
6792590 |
T |
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| Q |
149 |
aaatggaaactgtagattgcttcat |
173 |
Q |
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|||| ||||| || |||||||||| |
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| T |
6792589 |
aaataaaaactatatattgcttcat |
6792565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 22227490 - 22227369
Alignment:
| Q |
52 |
aacaccttcaaaaattccagtaccaccagtcacagttagataagtgtcctcataggttaggtaaggtccttgcacagctatttgaccatagtctccaaaa |
151 |
Q |
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|||||||||||| ||||||| |||||| || | || ||||| ||||| | || || || ||||||||||| || | ||| ||||||||||||||||| |
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| T |
22227490 |
aacaccttcaaagattccagaaccacctgttatagcaagatatgtgtcttggtatgtgagataaggtccttgtactgatatatgaccatagtctccaaag |
22227391 |
T |
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| Q |
152 |
tggaaactgtagattgcttcat |
173 |
Q |
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| ||| ||||| |||||||||| |
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| T |
22227390 |
tagaagctgtaaattgcttcat |
22227369 |
T |
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