View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6842_low_1 (Length: 750)
Name: NF6842_low_1
Description: NF6842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6842_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 159 - 730
Target Start/End: Complemental strand, 14380348 - 14379777
Alignment:
| Q |
159 |
tccatcgtgttttggaaattcatatattttaggatacatttgaattgcttacatagggcggaatgtagtaaaatgaaatggaataggttttttagatttg |
258 |
Q |
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| T |
14380348 |
tccatcgtgttttggaaattcatgtattttaggatacatttgaattgcttacatagggcggaatgtagtagaatgaaatggaataggttttttagatttg |
14380249 |
T |
|
| Q |
259 |
taaaagggatattatctcatttcatttcattggttcaatactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaa |
358 |
Q |
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||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14380248 |
taaaagggatattatctcatttcatttcactggttccacactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaa |
14380149 |
T |
|
| Q |
359 |
ttgttaacccttgcttaggaaaatatattagttatttatctctgattgcagtggttttttgcagcatcgtttactcactacctcttgctagagcttaatt |
458 |
Q |
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| T |
14380148 |
ttgttaacccttgcttaggaaaatatattagttatttatctctgattgcagtggttttttgcagcatcgtttactcactacctcttgctagagcttaatt |
14380049 |
T |
|
| Q |
459 |
gtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgggttttcttactcaccttgactacaacaattatgaggtttg |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14380048 |
gtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgagttttcttactcaccttgactacaacaattatgaggtttg |
14379949 |
T |
|
| Q |
559 |
cgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatgtaggttgattttatttct |
658 |
Q |
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| T |
14379948 |
cgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtcatgtttggttatataggttgattttatttct |
14379849 |
T |
|
| Q |
659 |
cgcatccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtcaaatagttgctgc |
730 |
Q |
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| T |
14379848 |
cgcatccgaagtttgttgagttgtaaattgaccaaaactctaattagtagaagttggtcaaatagttgctgc |
14379777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 14393352 - 14393194
Alignment:
| Q |
1 |
caagactaagaaaatagttaaacatacagaattgtaattacaatgaattgtcgaaatataccttcagcttcacttccaaaatctgggggaacatgttttg |
100 |
Q |
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| T |
14393352 |
caagactaagaaaatagttaaacatacagaattgtaattacaatgaattgtcgaaatataccttcagcttcacttccaaaatctgggggaacatgttttg |
14393253 |
T |
|
| Q |
101 |
ccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcct |
159 |
Q |
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| T |
14393252 |
ccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcct |
14393194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 429 - 727
Target Start/End: Original strand, 14246164 - 14246463
Alignment:
| Q |
429 |
ttactcactacctcttgctagagcttaattgtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacctctaatgggttgggttttcttac |
528 |
Q |
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||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
14246164 |
ttactcattacctctcgccagagctcaattgtgactggtgattcaattgtcaatgctatttgtgggaatcatgaacccgtaatgggttgagttttcttac |
14246263 |
T |
|
| Q |
529 |
tcaccttgactacaacaattatgaggtttgcgccatttatgtttgtgcattagtgtcgtacttgttgcatattgcccctggcaaagagcaagtaatgtca |
628 |
Q |
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||||||||| ||| ||||||| || |||||| |||||||||||||||||| |||||||| ||||||||||||| | ||| |||||||||| ||||||||| |
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| T |
14246264 |
tcaccttgaatacgacaattacgatgtttgccccatttatgtttgtgcatcagtgtcgttcttgttgcatatttctcctagcaaagagcacgtaatgtca |
14246363 |
T |
|
| Q |
629 |
tgtttggttatgtaggttgattttatttctcgcat-ccgaagtttgttgagttgtaaatttaccaaaactctaattagtagaagttcgtcaaatagttgc |
727 |
Q |
| |
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||||||||||||| ||||||| ||||| ||| | || | || | |||| |||||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
14246364 |
tgtttggttatgtgagttgattgtatttttcgtgtgccaatgtccgctgagctgtaaattctccaaaactctaattaatagaagtagatcaaatagttgc |
14246463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 229 - 423
Target Start/End: Original strand, 14245927 - 14246122
Alignment:
| Q |
229 |
aaatgaaatggaataggttttttagatttgtaaaagggatattatctcatttcatttcattggttcaatactataccatcaatttgaacatactctcgag |
328 |
Q |
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||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| | || | |||||||||||| ||| |||||||||| ||| |
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| T |
14245927 |
aaatgaaatggaatatgttttttagatttgaaaaatggatattatctcacttcatttcactaatttcacactataccatcagtttaaacatactcttgag |
14246026 |
T |
|
| Q |
329 |
tcttagctaatgggctgtgattttacacaattgttaacccttgcttaggaaaat-atatt-agttatttatctctgattgcagtggttttttgcagc |
423 |
Q |
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|||| | ||||||| ||||| |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||||||| | | ||||||||||||| |
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| T |
14246027 |
tctt-gataatgggttgtgagattacacaattattagcccttgcttaggaaaataatattgagttatttgtctctgattccggcggttttttgcagc |
14246122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14358304 - 14358346
Alignment:
| Q |
1 |
caagactaagaaaatagttaaacatacagaattgtaattacaa |
43 |
Q |
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| T |
14358304 |
caagactaaagaaatatttaaacatacagaattgtaattacaa |
14358346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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