View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6843_high_2 (Length: 350)

Name: NF6843_high_2
Description: NF6843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6843_high_2
NF6843_high_2
[»] chr7 (7 HSPs)
chr7 (5-332)||(44776782-44777111)
chr7 (139-203)||(19302502-19302566)
chr7 (153-203)||(19214359-19214409)
chr7 (143-193)||(3927953-3928003)
chr7 (138-203)||(19022523-19022588)
chr7 (139-195)||(27863664-27863720)
chr7 (141-193)||(33678857-33678909)
[»] chr8 (8 HSPs)
chr8 (141-209)||(1930096-1930164)
chr8 (139-203)||(35534552-35534616)
chr8 (139-204)||(1058016-1058081)
chr8 (139-204)||(27754469-27754534)
chr8 (139-203)||(26771332-26771396)
chr8 (140-195)||(28763443-28763498)
chr8 (139-194)||(43717873-43717928)
chr8 (139-195)||(18133731-18133787)
[»] chr2 (9 HSPs)
chr2 (153-209)||(40682348-40682404)
chr2 (139-209)||(4606986-4607056)
chr2 (139-204)||(449913-449978)
chr2 (112-184)||(30331837-30331909)
chr2 (157-204)||(41293120-41293167)
chr2 (113-181)||(38787814-38787883)
chr2 (139-204)||(42659150-42659215)
chr2 (139-180)||(43279466-43279507)
chr2 (142-202)||(31561684-31561744)
[»] chr5 (12 HSPs)
chr5 (139-203)||(16937822-16937886)
chr5 (142-204)||(10640019-10640081)
chr5 (139-209)||(41419380-41419450)
chr5 (142-211)||(11064725-11064794)
chr5 (141-197)||(41981644-41981700)
chr5 (139-202)||(41534506-41534569)
chr5 (139-184)||(12425659-12425704)
chr5 (153-202)||(39248166-39248215)
chr5 (143-184)||(42569555-42569596)
chr5 (143-203)||(7705941-7706001)
chr5 (236-328)||(12425516-12425608)
chr5 (141-193)||(32372689-32372741)
[»] chr4 (15 HSPs)
chr4 (119-195)||(21731575-21731651)
chr4 (113-204)||(24169329-24169420)
chr4 (112-195)||(35571543-35571626)
chr4 (114-204)||(13126490-13126580)
chr4 (139-209)||(49939890-49939960)
chr4 (139-274)||(17822804-17822936)
chr4 (139-203)||(22030270-22030334)
chr4 (141-184)||(29388700-29388743)
chr4 (142-204)||(20719769-20719831)
chr4 (139-184)||(49003981-49004026)
chr4 (140-184)||(25903890-25903934)
chr4 (139-203)||(29657451-29657515)
chr4 (142-194)||(40174633-40174685)
chr4 (139-203)||(54426110-54426174)
chr4 (152-204)||(56249589-56249641)
[»] chr1 (11 HSPs)
chr1 (139-203)||(2295163-2295227)
chr1 (141-203)||(6557039-6557101)
chr1 (153-203)||(49938814-49938864)
chr1 (257-328)||(37842409-37842480)
chr1 (141-183)||(38480515-38480557)
chr1 (139-193)||(50644194-50644248)
chr1 (139-184)||(7107451-7107496)
chr1 (139-200)||(29904821-29904882)
chr1 (139-184)||(33204333-33204378)
chr1 (113-186)||(34952286-34952359)
chr1 (153-202)||(38001663-38001712)
[»] chr6 (2 HSPs)
chr6 (141-184)||(2455074-2455117)
chr6 (140-184)||(31813247-31813291)
[»] chr3 (6 HSPs)
chr3 (142-209)||(21367728-21367795)
chr3 (139-202)||(39980797-39980860)
chr3 (141-203)||(13715513-13715575)
chr3 (236-329)||(30956659-30956752)
chr3 (236-329)||(30972471-30972564)
chr3 (139-203)||(31365127-31365191)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 44776782 - 44777111
Alignment:
Q  5 atggccgtcctttcgaagatgctttgatataaacttcactgcaaaatatcccacgatgtaacattaggaccgtcgtatacaacctaaataacaa--aaat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  44776782 atggccgtcctttcgaagatgctttgatataaacttcactgcaaaatatcccacgatgtaacattaggaccgtcgtatacaacctaaataaaaataaaat 44776881  T
Q  103 aaaaacccctagggtttgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 202  Q
    |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44776882 aaaaacacctagggtttgtttggattggtttaccacagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 44776981  T
Q  203 atagttcttcatacgctgattttggcccacttacataagttctccagggttgcatatgaaaacaacttataggttgtccgaaaacagtttatttttaatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  44776982 atagttcttcatacgctgattttggcccacttacataagttctccagggttgcttatgaaaacaacttatagcttgtccgaaaacagtttatttttaatt 44777081  T
Q  303 tatcttttgcaatagaaatagtttatgcat 332  Q
    ||||||||||||||||||||||||||||||    
T  44777082 tatcttttgcaatagaaatagtttatgcat 44777111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 19302502 - 19302566
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||||  |||||||||||||||| |||||||||||| || | |||||||| |||||||    
T  19302502 agcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgaca 19302566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 19214359 - 19214409
Alignment:
Q  153 cataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    |||||||||||||||||| ||||||||||||| | ||||||||| ||||||    
T  19214359 cataagttttgtgagattgtttgggagaacttatgaaaacagcaaatgaca 19214409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 3927953 - 3928003
Alignment:
Q  143 tatctactaccataagttttgtgagattatttgggagaacttgttaaaaca 193  Q
    ||||||||| |||||||||||||||| |||||| ||||| || ||||||||    
T  3927953 tatctactagcataagttttgtgagactatttgagagaattttttaaaaca 3928003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 19022523 - 19022588
Alignment:
Q  138 cagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    |||||||||||||  ||| |||||||||||||| |||||||||| || | |||||| | |||||||    
T  19022523 cagcttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgaca 19022588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 27863664 - 27863720
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagc 195  Q
    |||||||| |||  |||||||||||||||| |||||| |||||||| | ||||||||    
T  27863664 agcttatccactggcataagttttgtgagactatttgagagaacttatgaaaacagc 27863720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 33678909 - 33678857
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaacttgttaaaaca 193  Q
    ||||||||||  ||||||||||||||||  |||||||||||||| | ||||||    
T  33678909 cttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaaca 33678857  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 1930164 - 1930096
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttc 209  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||| |||||||  |||||||| ||||    
T  1930164 cttatctactgacataagttttgtgacattatttgggagaacttgtgaaaacagtttatgacattgttc 1930096  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 35534552 - 35534616
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||| |||||||| |||||||    
T  35534552 agcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagcttatgaca 35534616  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 1058016 - 1058081
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||| | ||||| || ||||||||    
T  1058016 agcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacat 1058081  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 27754534 - 27754469
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    ||||||| || || |||||||||||||||| ||||||||||||||| | |||||||  ||||||||    
T  27754534 agcttatttattatcataagttttgtgagactatttgggagaacttatgaaaacagtttatgacat 27754469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 26771396 - 26771332
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    |||||||||||   |||||||||||||||| | ||||||||||||| | |||||||| |||||||    
T  26771396 agcttatctacgggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgaca 26771332  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 28763498 - 28763443
Alignment:
Q  140 gcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagc 195  Q
    ||||||||| || |||||||||||||||| | ||||||||||||| | ||||||||    
T  28763498 gcttatctagtaacataagttttgtgagactgtttgggagaacttatgaaaacagc 28763443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 43717873 - 43717928
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacag 194  Q
    |||||||||| |  |||||||||||||||| ||||||||||||||| | |||||||    
T  43717873 agcttatctattgacataagttttgtgagactatttgggagaacttatgaaaacag 43717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 18133787 - 18133731
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagc 195  Q
    |||||||||||||  ||||||||||||||| | ||||||||| ||||| ||| ||||    
T  18133787 agcttatctactagtataagttttgtgagactgtttgggagagcttgtgaaatcagc 18133731  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 40682348 - 40682404
Alignment:
Q  153 cataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttc 209  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||    
T  40682348 cataagttttgtgagattgtttgggagaacttgttaaaatagcttatgacattgttc 40682404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 4607056 - 4606986
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttc 209  Q
    ||||||||||| |  ||||||||||||||| ||||||||||||||||| |||||| | |||||||| ||||    
T  4607056 agcttatctaccaatataagttttgtgagactatttgggagaacttgtgaaaacaacttatgacattgttc 4606986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 449978 - 449913
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    ||||||||||||| |||||||||| ||||||| |||||||| |||| | |||||||| ||||||||    
T  449978 agcttatctactagcataagttttatgagattgtttgggaggacttttgaaaacagcttatgacat 449913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 30331909 - 30331837
Alignment:
Q  112 tagggtttgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||| |||||| |||||  ||| | |||||||||||||  |||||||||||||||| | |||||||||||||    
T  30331909 tagggcttgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaactt 30331837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 41293120 - 41293167
Alignment:
Q  157 agttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    |||||||||||| ||||||||||||||| | |||||||| ||||||||    
T  41293120 agttttgtgagactatttgggagaacttataaaaacagcttatgacat 41293167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 38787814 - 38787883
Alignment:
Q  113 agggtttgtttcgattggtttactacagcttatctactaccataagt-tttgtgagattatttgggagaa 181  Q
    |||||||||||| |||||||||    ||||||||||||  ||||||| ||||||||| ||||||||||||    
T  38787814 agggtttgtttccattggtttatgtgagcttatctactgacataagtatttgtgagactatttgggagaa 38787883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 42659150 - 42659215
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    ||||||| ||||  |||||||||||||||| | |||||||||| || | |||||||| ||||||||    
T  42659150 agcttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacagcttatgacat 42659215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 43279466 - 43279507
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggaga 180  Q
    ||||||||||||| |||||||||||||||| | |||||||||    
T  43279466 agcttatctactagcataagttttgtgagactgtttgggaga 43279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 31561684 - 31561744
Alignment:
Q  142 ttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 202  Q
    |||||||||| |||||||||||| | | | ||||||| ||||| | |||||||||||||||    
T  31561684 ttatctactaacataagttttgtaaaactgtttgggaaaacttttgaaaacagcatatgac 31561744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 16937822 - 16937886
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||||| |||||||||||||||| | ||||| ||||||| | |||||||| |||||||    
T  16937822 agcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagcttatgaca 16937886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 10640081 - 10640019
Alignment:
Q  142 ttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    |||||||||  |||||||||||||| ||| ||||||||||||| | |||||||| ||||||||    
T  10640081 ttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacat 10640019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 41419450 - 41419380
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttc 209  Q
    |||| |||||||  ||||| |||||||||||| ||||||| ||||||| |||||||| |||||||| ||||    
T  41419450 agctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgacattgttc 41419380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 11064794 - 11064725
Alignment:
Q  142 ttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttctt 211  Q
    |||||||| | |||||||||||||||||| |||| |||||||| | |||| ||| |||||||| ||||||    
T  11064794 ttatctaccaacataagttttgtgagattgtttgagagaacttatgaaaatagcttatgacattgttctt 11064725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 41981644 - 41981700
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcat 197  Q
    ||||||||||| ||| |||||||||||| | ||||||||||||| | ||||||||||    
T  41981644 cttatctactagcattagttttgtgagactgtttgggagaacttatgaaaacagcat 41981700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 41534569 - 41534506
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 202  Q
    |||| |||||||  ||||| |||||||||||| ||||||| ||||||| |||||||| ||||||    
T  41534569 agctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgac 41534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 12425704 - 12425659
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||    
T  12425704 agcttatctactgtcataagttttgtgagactgtttgggagaactt 12425659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 39248215 - 39248166
Alignment:
Q  153 cataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 202  Q
    |||||||||||||||| | ||||||||||||| | |||||||| ||||||    
T  39248215 cataagttttgtgagactgtttgggagaacttataaaaacagcttatgac 39248166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 42569555 - 42569596
Alignment:
Q  143 tatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||| |||||||||||||||| |||||| ||||||||    
T  42569555 tatctactagcataagttttgtgagactatttgagagaactt 42569596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 7705941 - 7706001
Alignment:
Q  143 tatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||| ||||||||||||||   | ||||||||||||| | |||||||| |||||||    
T  7705941 tatctactagcataagttttgtgacgctctttgggagaacttatgaaaacagcttatgaca 7706001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 12425608 - 12425516
Alignment:
Q  236 cataagttctccagggttgcatatgaaaacaacttataggttgtccgaaaacagtttatttttaatttatcttttgcaatagaaatagtttat 328  Q
    ||||||||||||| | | || | |||||||| ||||||| || | |||||||| ||||  |||| |||||||||| | ||| |||||||||||    
T  12425608 cataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactatataaatagtttat 12425516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 32372741 - 32372689
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaacttgttaaaaca 193  Q
    ||||||||||  |||||||||||||||| | ||||| ||||||| ||||||||    
T  32372741 cttatctactggcataagttttgtgagactgtttggaagaactttttaaaaca 32372689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 21731575 - 21731651
Alignment:
Q  119 tgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagc 195  Q
    ||||| |||||||||| |  ||| ||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  21731575 tgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaacttatgaaaacagc 21731651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 24169420 - 24169329
Alignment:
Q  113 agggtttgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    |||| |||||| |||||| ||| || || |||||||||  |||||||||||||||| |||||| |||||||| | |||| ||| ||||||||    
T  24169420 agggcttgtttggattggcttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgacat 24169329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 35571543 - 35571626
Alignment:
Q  112 tagggtttgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagc 195  Q
    |||||| ||||| |||||| ||| |  ||||||||||||| ||||||||||||| |||  ||||||||||||| | ||||||||    
T  35571543 tagggtctgtttggattggcttatttgagcttatctactagcataagttttgtgggatagtttgggagaacttttaaaaacagc 35571626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 13126490 - 13126580
Alignment:
Q  114 gggtttgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    |||| ||||| |||||| ||| |  |||||| |||||| |||||||||||||||| | ||||| ||||||| | |||||||| ||||||||    
T  13126490 gggtctgtttggattggcttattttagcttacctactaacataagttttgtgagactgtttggaagaacttataaaaacagcttatgacat 13126580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 49939890 - 49939960
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttc 209  Q
    ||||||||||||| |||||| ||||||||| ||||||| ||||||| | |||| ||| |||||||| ||||    
T  49939890 agcttatctactagcataagctttgtgagactatttggaagaacttatgaaaagagcttatgacattgttc 49939960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 274
Target Start/End: Original strand, 17822804 - 17822936
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttcttcatacgctgattttggcccacttacat 238  Q
    ||||||||||||  |||||||| ||||||| ||||| ||||||| | | |||||||| |||||||   || |||||| |||  |||| ||  | || |||    
T  17822804 agcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgaca---tttttcataagctttttttagcttattttcat 17822900  T
Q  239 aagttctccagggttgcatatgaaaacaacttatag 274  Q
    |||||||||| | | || ||||||||||||||||||    
T  17822901 aagttctccaagatagcttatgaaaacaacttatag 17822936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 22030334 - 22030270
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||| |||| || |||||||||||||||  ||||||||||||||| | |||||||| |||||||    
T  22030334 agcttgtctattagcataagttttgtgagcctatttgggagaacttatgaaaacagcttatgaca 22030270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 29388743 - 29388700
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||    
T  29388743 cttatctactaacataagttttgtaagattgtttgggagaactt 29388700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 20719831 - 20719769
Alignment:
Q  142 ttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    |||||||||| ||||||||||||| || ||||||| |||||||   |||||||| ||||||||    
T  20719831 ttatctactagcataagttttgtgcgactatttggaagaacttaagaaaacagcttatgacat 20719769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 49003981 - 49004026
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||||||| | |||||||||||||| |||||| ||||||||    
T  49003981 agcttatctactagcttaagttttgtgagactatttgagagaactt 49004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 25903934 - 25903890
Alignment:
Q  140 gcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||    
T  25903934 gcttatctactaacataagttttgtgagacttattgggagaactt 25903890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 29657515 - 29657451
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||| | || |||||||||||||||  ||| |||||||| | |||||||| |||||||    
T  29657515 agcttatctaccaacacaagttttgtgagattgcttgagagaacttatgaaaacagcttatgaca 29657451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 40174685 - 40174633
Alignment:
Q  142 ttatctactaccataagttttgtgagattatttgggagaacttgttaaaacag 194  Q
    |||||||||| |||||||||||||||| | ||||||| ||||| | |||||||    
T  40174685 ttatctactaacataagttttgtgagactgtttgggataacttatgaaaacag 40174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 54426174 - 54426110
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||||  |||||||||||||||| |  ||||||||||||   |||||||| |||||||    
T  54426174 agcttatctactggcataagttttgtgagactgcttgggagaacttaggaaaacagcttatgaca 54426110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 56249641 - 56249589
Alignment:
Q  152 ccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacat 204  Q
    ||||||||||||||||||| ||||| | ||||| | |||||||| ||||||||    
T  56249641 ccataagttttgtgagattgtttggaacaacttatcaaaacagcttatgacat 56249589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 2295227 - 2295163
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||| | |||||||| |||||||    
T  2295227 agcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgaca 2295163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 6557101 - 6557039
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||| |||||||||||||||| |||||| |||||||| | |||| ||| |||||||    
T  6557101 cttatctactaacataagttttgtgagactatttgagagaacttatgaaaatagcttatgaca 6557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 49938864 - 49938814
Alignment:
Q  153 cataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    |||||||||||||||||| ||||||||||||| | |||||||| |||||||    
T  49938864 cataagttttgtgagattgtttgggagaacttatgaaaacagcttatgaca 49938814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 37842409 - 37842480
Alignment:
Q  257 tatgaaaacaacttataggttgtccgaaaacagtttatttttaatttatcttttgcaatagaaatagtttat 328  Q
    |||||||||||||||||| || | |||| ||||||||  |||| || ||||||||| |||||||||| ||||    
T  37842409 tatgaaaacaacttatagcttattcgaacacagtttaactttatttcatcttttgctatagaaatagcttat 37842480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 38480515 - 38480557
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaact 183  Q
    |||||||| || |||||||||||||||| ||||||||||||||    
T  38480515 cttatctagtagcataagttttgtgagactatttgggagaact 38480557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 50644194 - 50644248
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaaca 193  Q
    ||||||||||||| |||| ||||||||||| | ||||||||||||| | ||||||    
T  50644194 agcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaaca 50644248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 7107451 - 7107496
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||||||  |||||||||||||| | |||||||||||||||    
T  7107451 agcttatctactgacataagttttgtgatactatttgggagaactt 7107496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 29904882 - 29904821
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatg 200  Q
    ||||||||||||  |||||||||||||||| | |||| |||||||| | |||||||| ||||    
T  29904882 agcttatctacttgcataagttttgtgagactgtttgagagaacttataaaaacagcttatg 29904821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 33204333 - 33204378
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||    
T  33204333 agcttatctactgacataagttttgtgagactgtttgggagaactt 33204378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 34952359 - 34952286
Alignment:
Q  113 agggtttgtttcgattggtttactacagcttatctactaccataagttttgtgagattatttgggagaacttgt 186  Q
    ||||| ||||| |||||| ||| |  |||||||||| |   ||||| |||||||||||||||||||||||||||    
T  34952359 agggtctgtttggattggcttatttgagcttatctattgggataagatttgtgagattatttgggagaacttgt 34952286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 38001712 - 38001663
Alignment:
Q  153 cataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 202  Q
    |||||||||||||||| | ||||||||||||| | |||||||| ||||||    
T  38001712 cataagttttgtgagactgtttgggagaacttatgaaaacagcttatgac 38001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 2455117 - 2455074
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    ||||||||||| |||||||||||||||| | |||||||||||||    
T  2455117 cttatctactaacataagttttgtgagactgtttgggagaactt 2455074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 31813291 - 31813247
Alignment:
Q  140 gcttatctactaccataagttttgtgagattatttgggagaactt 184  Q
    |||||| ||||  |||||||||||||||| |||||||||||||||    
T  31813291 gcttatttactggcataagttttgtgagactatttgggagaactt 31813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 21367795 - 21367728
Alignment:
Q  142 ttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgacatagttc 209  Q
    |||||||| | ||||||||||||| || | ||||||||||||| | |||||||| |||||||| ||||    
T  21367795 ttatctaccagcataagttttgtgggactgtttgggagaacttatgaaaacagcttatgacattgttc 21367728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 39980860 - 39980797
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgac 202  Q
    ||||||||||||| |||||||||||||||| | |||  |||||||| | |||||||| ||||||    
T  39980860 agcttatctactagcataagttttgtgagactgtttaagagaacttatgaaaacagcttatgac 39980797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 13715513 - 13715575
Alignment:
Q  141 cttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    ||||||||||| |||| ||||||||||| | ||||| |||||||  ||||||||| |||||||    
T  13715513 cttatctactagcatatgttttgtgagactgtttggtagaacttcctaaaacagcttatgaca 13715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 30956659 - 30956752
Alignment:
Q  236 cataagttctccagggttgcatatgaaaacaacttataggttgtccgaaaacagtttatttttaatttatcttttgcaatagaaatagtttatg 329  Q
    ||||||||||||| | | || | ||||||||||||||||  | | | |||||| ||||  |||| |||||||||||| |||||||||| |||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatg 30956752  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 30972471 - 30972564
Alignment:
Q  236 cataagttctccagggttgcatatgaaaacaacttataggttgtccgaaaacagtttatttttaatttatcttttgcaatagaaatagtttatg 329  Q
    ||||||||||||| | | || | ||||||||||||||||  | | | |||||| ||||  |||| |||||||||||| |||||||||| |||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatg 30972564  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 31365127 - 31365191
Alignment:
Q  139 agcttatctactaccataagttttgtgagattatttgggagaacttgttaaaacagcatatgaca 203  Q
    |||||||||| |  |||||||||||||||| | ||||||||||||| | ||| |||| |||||||    
T  31365127 agcttatctattggcataagttttgtgagactgtttgggagaacttatgaaagcagcttatgaca 31365191  T

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