View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6843_low_4 (Length: 286)

Name: NF6843_low_4
Description: NF6843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6843_low_4
NF6843_low_4
[»] chr6 (2 HSPs)
chr6 (18-286)||(12197090-12197358)
chr6 (78-116)||(8317708-8317746)
[»] chr7 (2 HSPs)
chr7 (18-286)||(6372988-6373245)
chr7 (78-116)||(7942287-7942325)
[»] chr3 (6 HSPs)
chr3 (45-286)||(14638955-14639196)
chr3 (79-185)||(25430856-25430962)
chr3 (78-116)||(43552207-43552245)
chr3 (78-116)||(54169548-54169586)
chr3 (194-258)||(2681709-2681773)
chr3 (196-252)||(32370237-32370293)
[»] chr1 (2 HSPs)
chr1 (213-260)||(13160231-13160278)
chr1 (78-116)||(26313928-26313966)
[»] scaffold0044 (1 HSPs)
scaffold0044 (78-116)||(47069-47107)
[»] chr8 (4 HSPs)
chr8 (78-116)||(199888-199926)
chr8 (78-116)||(314725-314763)
chr8 (194-252)||(18193251-18193309)
chr8 (78-116)||(30408007-30408045)
[»] chr5 (4 HSPs)
chr5 (78-116)||(7101578-7101616)
chr5 (78-116)||(12021204-12021242)
chr5 (78-116)||(16796584-16796622)
chr5 (78-116)||(37679951-37679989)
[»] chr4 (2 HSPs)
chr4 (78-116)||(44149473-44149511)
chr4 (193-251)||(50630250-50630308)
[»] chr2 (2 HSPs)
chr2 (78-116)||(8053307-8053345)
chr2 (78-116)||(36672966-36673004)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 12197090 - 12197358
Alignment:
Q  18 caaatgactgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaagctgcagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12197090 caaatgactgacatatggttttctacctgaccaaacctcttcaggcacttgattcttcaatttcttagtgggacatctatttaagatgtaagctgcaata 12197189  T
Q  118 ttccctactttaccccaaaattcaagaggaagcttcttctctatcagcataatcctagccatatcaagtaaactcctattcctcctttcagcaataccat 217  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12197190 ttccctactttaccccaaaattcatgaggtagcttcttctctatcagcataatcctagccatatcaagtaaactcttattcctcctttcagcaataccat 12197289  T
Q  218 tgtgttgaggagtgtaaggagttgtcacttcatgaactataccctaacttgtgcaataagattcaaaat 286  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  12197290 tgcgttgaggagtgtaaggagttgtcacttcatgaactataccctgacttgtgcagtaagattcaaaat 12197358  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 8317708 - 8317746
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8317708 tttcttagtgggacatctgtttaagatgtatgctgcagt 8317746  T

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Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 6372988 - 6373245
Alignment:
Q  18 caaatgactgacatatggttttctacctgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaagctgcagta 117  Q
    |||||||||||   ||||||||||||| ||||||||||||||||  ||||||||||||||||||||           |||||||||| |||||| |||||    
T  6372988 caaatgactgattgatggttttctacccgaccaaacctcttcaggaacttgattcttcaatttctt-----------tatttaagatataagctacagta 6373076  T
Q  118 ttccctactttaccccaaaattcaagaggaagcttcttctctatcagcataatcctagccatatcaagtaaactcctattcctcctttcagcaataccat 217  Q
    ||| || ||| |||||| |||||| |||| ||||| |||||| |||||||| | ||||||||||| |||| |||| ||||||| |||||| ||| |||||    
T  6373077 ttcactgcttcaccccagaattcatgaggtagctttttctctttcagcatatttctagccatatcgagtagactcttattccttctttcaacaagaccat 6373176  T
Q  218 tgtgttgaggagtgtaaggagttgtcacttcatgaactataccctaacttgtgcaataagattcaaaat 286  Q
    |||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  6373177 tgtgttgaggagtgtaattagttgtcacttcatgaattatactctaacttgtgcaataagattaaaaat 6373245  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 7942287 - 7942325
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7942287 tttcttagtgggacatctgtttaagatgtatgctgcagt 7942325  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 286
Target Start/End: Complemental strand, 14639196 - 14638955
Alignment:
Q  45 tgaccaaacctcttcagacacttgattcttcaatttcttagtgggacatctatttaagatgtaagctgcagtattccctactttaccccaaaattcaaga 144  Q
    |||||||| |||||||| ||| | || |||||  |||||||| |||||||||||||  || |||| |||||| ||  || ||  ||||||||||||| ||    
T  14639196 tgaccaaatctcttcaggcaccttatccttcatcttcttagtaggacatctatttagaatataagttgcagtgttgactgctgcaccccaaaattcatga 14639097  T
Q  145 ggaagcttcttctctatcagcataatcctagccatatcaagtaaactcctattcctcctttcagcaataccattgtgttgaggagtgtaaggagttgtca 244  Q
    || | ||| |||||| ||| |||| ||||  |||||||||| |||   |||||| ||||||||| || | ||||||||| |||||||||||||||||| |    
T  14639096 ggtatctttttctctttcaacatactcctgaccatatcaagcaaatatctattcttcctttcagtaagagcattgtgttaaggagtgtaaggagttgtaa 14638997  T
Q  245 cttcatgaactataccctaacttgtgcaataagattcaaaat 286  Q
    ||||||| | |||||||| | ||||||| |||||||||||||    
T  14638996 cttcatggattataccctgatttgtgcagtaagattcaaaat 14638955  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 25430962 - 25430856
Alignment:
Q  79 ttcttagtgggacatctatttaagatgtaagctgcagtattccctactttaccccaaaattcaagaggaagcttcttctctatcagcataatcctagcca 178  Q
    |||||||||||||||||||| || ||||||||| |||||| |  | ||| || |||||| ||| | || | |||||| ||| ||| ||||| ||||||||    
T  25430962 ttcttagtgggacatctattcaatatgtaagctacagtatccaatgcttaactccaaaactcatgtggtaacttcttttctttcatcataaacctagcca 25430863  T
Q  179 tatcaag 185  Q
    |||||||    
T  25430862 tatcaag 25430856  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 43552245 - 43552207
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  43552245 tttcttagtgggacatctgtttaagatgtatgctgcagt 43552207  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 54169548 - 54169586
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  54169548 tttcttagtgggacatctgtttaagatgtatgctgcagt 54169586  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 2681709 - 2681773
Alignment:
Q  194 tattcctcctttcagcaataccattgtgttgaggagtgtaaggagttgtcacttcatgaactata 258  Q
    |||||||||||||| | | ||||||||||||  |||||||||| ||||| ||| |||| ||||||    
T  2681709 tattcctcctttcatccaaaccattgtgttgttgagtgtaaggtgttgtaactccatgcactata 2681773  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 32370237 - 32370293
Alignment:
Q  196 ttcctcctttcagcaataccattgtgttgaggagtgtaaggagttgtcacttcatga 252  Q
    ||||||||||| || | |||||||||||||||||| || |||| ||| |||||||||    
T  32370237 ttcctcctttctgctaaaccattgtgttgaggagtatagggagatgtaacttcatga 32370293  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 13160278 - 13160231
Alignment:
Q  213 accattgtgttgaggagtgtaaggagttgtcacttcatgaactatacc 260  Q
    |||||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  13160278 accattgtgttgtggagtataaggagttgtaacttcatgcactatacc 13160231  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 26313966 - 26313928
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  26313966 tttcttagtgggacatctgtttaagatgtatgctgcagt 26313928  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 47069 - 47107
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  47069 tttcttagtgggacatctgtttaagatgtatgctgcagt 47107  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 199888 - 199926
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  199888 tttcttagtgggacatctgtttaagatgtatgctgcagt 199926  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 314725 - 314763
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  314725 tttcttagtgggacatctgtttaagatgtatgctgcagt 314763  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 18193309 - 18193251
Alignment:
Q  194 tattcctcctttcagcaataccattgtgttgaggagtgtaaggagttgtcacttcatga 252  Q
    ||||||||||||| || | |||||||||||||||||| || |||| ||| |||||||||    
T  18193309 tattcctcctttctgctaaaccattgtgttgaggagtatagggagatgtgacttcatga 18193251  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 30408007 - 30408045
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  30408007 tttcttagtgggacatctgtttaagatgtatgctgcagt 30408045  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 7101578 - 7101616
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  7101578 tttcttagtgggacatctgtttaagatgtatgctgcagt 7101616  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 12021242 - 12021204
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  12021242 tttcttagtgggacatctgtttaagatgtatgctgcagt 12021204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 16796622 - 16796584
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  16796622 tttcttagtgggacatctgtttaagatgtatgctgcagt 16796584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 37679989 - 37679951
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  37679989 tttcttagtgggacatctgtttaagatgtatgctgcagt 37679951  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 44149511 - 44149473
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  44149511 tttcttagtgggacatctgtttaagatgtatgctgcagt 44149473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 50630250 - 50630308
Alignment:
Q  193 ctattcctcctttcagcaataccattgtgttgaggagtgtaaggagttgtcacttcatg 251  Q
    ||||||||||||||||| | |||||||||||| ||||| |||||||  || ||||||||    
T  50630250 ctattcctcctttcagccaaaccattgtgttgtggagtataaggagcagtgacttcatg 50630308  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 8053345 - 8053307
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8053345 tttcttagtgggacatctgtttaagatgtatgctgcagt 8053307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 36673004 - 36672966
Alignment:
Q  78 tttcttagtgggacatctatttaagatgtaagctgcagt 116  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  36673004 tttcttagtgggacatctgtttaagatgtatgctgcagt 36672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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