View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6843_low_5 (Length: 284)
Name: NF6843_low_5
Description: NF6843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6843_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 13289825 - 13290087
Alignment:
| Q |
19 |
catctccacccaaaatcattaggcaatnnnnnnntgggctacctctcttatatatacaacattagcttattgatagtcaatgcgagacttaatcactcac |
118 |
Q |
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| T |
13289825 |
catctccacccaaaatcattaggcaataaaaaaatgggctacctctcttatatatacaacattagcttattcatagtcaatgcgagacttaatcactcac |
13289924 |
T |
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| Q |
119 |
atttaaactcaacgatctcttggagatagtctcacacttgacg--------gttgtgatgtgtcaagtgtaagttaaagttccacatttgatagaagata |
210 |
Q |
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| T |
13289925 |
atttaaactcaacgatttcttggagatagtcttacacttgacggcgaggttgttgtgatgtgtcaagtgtgagttaaagttccacattggatagaagcga |
13290024 |
T |
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| Q |
211 |
atatataagtgataaaacgaatatacctaataccttaaattttttgggtgaatatgtgatgtc |
273 |
Q |
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| T |
13290025 |
atatataagtgagaggaccgatatacttaataccttaagttttttgggtgaatatgtgatgtc |
13290087 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 23041526 - 23041571
Alignment:
| Q |
162 |
gttgtgatgtgtcaagtgtaagttaaagttccacatttgatagaag |
207 |
Q |
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| T |
23041526 |
gttgtgatatgtcaagtgtgagttaaagttccacattagatagaag |
23041571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 29977429 - 29977399
Alignment:
| Q |
168 |
atgtgtcaagtgtaagttaaagttccacatt |
198 |
Q |
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| T |
29977429 |
atgtgtcaagtgtaagttaaagttccacatt |
29977399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 45815334 - 45815378
Alignment:
| Q |
162 |
gttgtgatgtgtcaagtgtaagttaaagttccacatttgatagaa |
206 |
Q |
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| T |
45815334 |
gttgtgatgtgttaagtatgagttaaagtttcacatttgatagaa |
45815378 |
T |
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