View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6843_low_7 (Length: 237)

Name: NF6843_low_7
Description: NF6843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6843_low_7
NF6843_low_7
[»] chr5 (27 HSPs)
chr5 (20-228)||(7065637-7065845)
chr5 (49-115)||(14958924-14958990)
chr5 (36-102)||(34445267-34445333)
chr5 (34-102)||(12399322-12399390)
chr5 (34-102)||(35458132-35458200)
chr5 (35-102)||(8567943-8568010)
chr5 (44-102)||(16829209-16829266)
chr5 (48-102)||(28351024-28351078)
chr5 (34-115)||(26179764-26179845)
chr5 (49-113)||(21032527-21032591)
chr5 (34-101)||(25840579-25840647)
chr5 (31-102)||(5865904-5865975)
chr5 (34-101)||(32741378-32741445)
chr5 (49-95)||(892564-892610)
chr5 (44-102)||(892627-892685)
chr5 (47-101)||(18200668-18200722)
chr5 (48-102)||(28499788-28499842)
chr5 (63-113)||(31691661-31691711)
chr5 (20-113)||(10244045-10244138)
chr5 (49-102)||(18550983-18551036)
chr5 (49-114)||(20269523-20269588)
chr5 (58-95)||(31785965-31786002)
chr5 (36-101)||(43221629-43221694)
chr5 (45-97)||(1138298-1138350)
chr5 (46-102)||(14751203-14751259)
chr5 (194-222)||(25794905-25794933)
chr5 (43-95)||(42364233-42364285)
[»] chr7 (13 HSPs)
chr7 (30-97)||(19509276-19509343)
chr7 (34-107)||(17801448-17801521)
chr7 (34-101)||(40992797-40992864)
chr7 (46-114)||(2399694-2399762)
chr7 (59-114)||(29046350-29046405)
chr7 (30-97)||(2635659-2635726)
chr7 (59-106)||(3485913-3485960)
chr7 (36-106)||(12810311-12810381)
chr7 (49-103)||(42926990-42927044)
chr7 (30-67)||(21955376-21955413)
chr7 (49-101)||(35985267-35985319)
chr7 (49-101)||(36006675-36006727)
chr7 (182-234)||(36473264-36473316)
[»] chr3 (15 HSPs)
chr3 (20-102)||(18093784-18093866)
chr3 (34-115)||(55121240-55121321)
chr3 (20-102)||(29212849-29212931)
chr3 (59-114)||(27697260-27697315)
chr3 (45-99)||(26601972-26602026)
chr3 (59-101)||(29014603-29014645)
chr3 (33-102)||(41067719-41067788)
chr3 (47-102)||(37914536-37914591)
chr3 (61-102)||(26331309-26331350)
chr3 (34-102)||(28732464-28732533)
chr3 (34-101)||(29595884-29595950)
chr3 (58-102)||(16867624-16867668)
chr3 (58-102)||(30121957-30122001)
chr3 (48-80)||(47250856-47250888)
chr3 (49-113)||(49733617-49733681)
[»] chr1 (26 HSPs)
chr1 (34-102)||(31032448-31032516)
chr1 (35-115)||(5368841-5368921)
chr1 (47-114)||(1609958-1610025)
chr1 (47-113)||(24419612-24419678)
chr1 (21-97)||(20814797-20814876)
chr1 (59-116)||(38636221-38636278)
chr1 (46-102)||(35489203-35489259)
chr1 (46-102)||(49166686-49166742)
chr1 (52-103)||(5700118-5700169)
chr1 (47-102)||(8174174-8174229)
chr1 (34-97)||(11900894-11900957)
chr1 (20-102)||(24419539-24419621)
chr1 (33-102)||(5346968-5347037)
chr1 (34-102)||(14231052-14231120)
chr1 (49-96)||(10332049-10332096)
chr1 (47-101)||(50403096-50403151)
chr1 (58-95)||(20273210-20273247)
chr1 (46-102)||(8900800-8900856)
chr1 (49-101)||(11016670-11016722)
chr1 (57-97)||(15054793-15054832)
chr1 (58-106)||(19175678-19175726)
chr1 (36-101)||(25395929-25395990)
chr1 (58-102)||(34890192-34890236)
chr1 (34-102)||(36618874-36618942)
chr1 (47-87)||(50105681-50105721)
chr1 (58-106)||(51171346-51171394)
[»] chr8 (27 HSPs)
chr8 (34-99)||(20694428-20694493)
chr8 (47-102)||(27988085-27988140)
chr8 (47-102)||(28045387-28045442)
chr8 (155-218)||(29869976-29870039)
chr8 (35-106)||(44329159-44329230)
chr8 (60-102)||(12354457-12354499)
chr8 (47-113)||(27966394-27966460)
chr8 (49-106)||(9503532-9503589)
chr8 (34-98)||(27988145-27988210)
chr8 (34-98)||(28045447-28045512)
chr8 (49-106)||(30557009-30557066)
chr8 (34-106)||(429832-429904)
chr8 (46-102)||(1784167-1784223)
chr8 (47-103)||(12328781-12328837)
chr8 (61-113)||(14578595-14578647)
chr8 (47-95)||(27976805-27976853)
chr8 (47-95)||(28034074-28034122)
chr8 (46-97)||(37219289-37219340)
chr8 (47-113)||(33836801-33836867)
chr8 (49-106)||(9503623-9503680)
chr8 (58-95)||(13964432-13964469)
chr8 (47-104)||(24259133-24259189)
chr8 (195-235)||(1568646-1568686)
chr8 (34-102)||(9428127-9428195)
chr8 (57-97)||(10184644-10184684)
chr8 (50-106)||(10839769-10839825)
chr8 (47-99)||(14578512-14578564)
[»] chr4 (23 HSPs)
chr4 (34-115)||(38562192-38562273)
chr4 (49-95)||(30938916-30938962)
chr4 (44-102)||(39993118-39993176)
chr4 (58-95)||(8311327-8311364)
chr4 (49-102)||(38562132-38562185)
chr4 (49-97)||(33004182-33004230)
chr4 (46-102)||(44626475-44626531)
chr4 (71-114)||(20291776-20291819)
chr4 (47-106)||(23673435-23673494)
chr4 (20-98)||(23673367-23673444)
chr4 (58-95)||(19936508-19936545)
chr4 (34-75)||(51303870-51303911)
chr4 (46-114)||(6371993-6372061)
chr4 (47-106)||(7277418-7277478)
chr4 (58-106)||(7277506-7277554)
chr4 (46-102)||(10065072-10065128)
chr4 (35-115)||(20783682-20783762)
chr4 (43-95)||(22720519-22720571)
chr4 (47-95)||(24100776-24100824)
chr4 (47-95)||(24100887-24100935)
chr4 (49-101)||(33508613-33508665)
chr4 (46-102)||(52840274-52840330)
chr4 (49-97)||(53225729-53225777)
[»] chr2 (16 HSPs)
chr2 (34-102)||(17621089-17621157)
chr2 (34-102)||(9113986-9114056)
chr2 (49-113)||(32516215-32516279)
chr2 (47-102)||(29168579-29168634)
chr2 (47-102)||(30429075-30429130)
chr2 (35-102)||(41517431-41517498)
chr2 (49-102)||(31719187-31719240)
chr2 (50-102)||(11565007-11565059)
chr2 (58-102)||(29765754-29765798)
chr2 (43-114)||(8996828-8996899)
chr2 (182-233)||(40442533-40442584)
chr2 (182-233)||(40503690-40503741)
chr2 (57-95)||(36129242-36129280)
chr2 (59-97)||(36447002-36447040)
chr2 (58-95)||(19268073-19268110)
chr2 (34-102)||(41253717-41253785)
[»] chr6 (15 HSPs)
chr6 (48-101)||(5069947-5070000)
chr6 (58-102)||(674140-674184)
chr6 (43-94)||(14093095-14093146)
chr6 (20-79)||(28083379-28083437)
chr6 (72-102)||(10355899-10355929)
chr6 (34-106)||(690960-691033)
chr6 (49-102)||(3846437-3846490)
chr6 (58-95)||(16121055-16121092)
chr6 (34-99)||(34803519-34803584)
chr6 (46-102)||(862900-862955)
chr6 (61-101)||(2271218-2271258)
chr6 (58-106)||(3203761-3203809)
chr6 (49-97)||(9605378-9605426)
chr6 (46-102)||(24252959-24253015)
chr6 (43-79)||(33123040-33123076)
[»] scaffold0003 (1 HSPs)
scaffold0003 (58-116)||(320761-320819)
[»] scaffold0777 (2 HSPs)
scaffold0777 (49-102)||(4718-4771)
scaffold0777 (33-102)||(4777-4846)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 7065637 - 7065845
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatgacaa 119  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7065637 taatgcatcagacatataaatgtgatcagatacattaattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatgacaa 7065736  T
Q  120 ttttataaacggttagatgcatatgtnnnnnnnnnttggacaaaatttaggtgtatttcatctggtttttcacataaaattcattttttatggttataat 219  Q
    |||||||||||||||||||||| |||         |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7065737 ttttataaacggttagatgcatgtgtaaaaaaaaattggacaagatttaggtgtatttcatctggtttttcacataaaattcattttttatggttataac 7065836  T
Q  220 aaattttga 228  Q
    |||||||||    
T  7065837 aaattttga 7065845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 14958924 - 14958990
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatg 115  Q
    |||||||  ||||||||||||||||||||| || ||||||||||| |||| |||| |||||||||||    
T  14958924 atacattagttattcaatgaatttaaaaagatgttttttgcttatgaatgagacttgaaagagtatg 14958990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 34445333 - 34445267
Alignment:
Q  36 taaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||||||||| || ||||||| |||||  |||||||||| |||||||||||||| |||||    
T  34445333 taaatgtgactagataccttaattattccatgaacctaaaaagttgttttttgcttataaaagtgac 34445267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 12399322 - 12399390
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||||||||| ||| |||||||||| ||| |||||  ||| |||||| |||||||||||||    
T  12399322 tataaatgtgactagatatattaattattcaataaatctaaaatattgttttttgattataaatgtgac 12399390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 35458200 - 35458132
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||| ||||||| |||| || | ||||||||||||| |||||||||| |||||| ||||||||||||||    
T  35458200 tatacatgtgaccagatgcaataattattcaatgaacttaaaaagttaatttttccttataaatgtgac 35458132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 8567943 - 8568010
Alignment:
Q  35 ataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||| |   |||||| |||||||||||||    
T  8567943 ataaatgtgacaagatacattaattattcaatgtatttaaaaaatcattttttgtttataaatgtgac 8568010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 16829266 - 16829209
Alignment:
Q  44 actagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||||   ||||||||||| |||||||||| |||||||||||||||||||||    
T  16829266 actagatacattagatattcaatgaacttaaaaagtt-atttttgcttataaatgtgac 16829209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 28351024 - 28351078
Alignment:
Q  48 gatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||  ||||||||||||| |||||||||| ||||||||||||||| ||||    
T  28351024 gatacattagttattcaatgaatctaaaaagttgttttttgcttataaatatgac 28351078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 26179764 - 26179845
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatg 115  Q
    |||||||||||||| ||||||| ||||||  || ||| ||||| | || ||||||||||||||||||| ||||  |||||||    
T  26179764 tataaatgtgactatatacattaattattttataaatctaaaatgatgttttttgcttataaatgtgattggatggagtatg 26179845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 21032591 - 21032527
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||||| ||||||||||| || |||||||| || ||||||||||||  ||||||||| ||||||    
T  21032591 atacattaattattcaatgtatataaaaagtggagttttgcttataatagtgactggagagagta 21032527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 25840647 - 25840579
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaattta-aaaagttgatttttgcttataaatgtga 101  Q
    |||||||||||| | |||||||  |||||||||||||||| |||| ||| ||||| |||||||||||||    
T  25840647 tataaatgtgaccaaatacattacttattcaatgaatttaaaaaaattgttttttacttataaatgtga 25840579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 5865904 - 5865975
Alignment:
Q  31 acatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||||||  |||| ||  |||||||||||||  ||||||  || ||||||||||||||||||||    
T  5865904 acatataaatgtgaccggatatatcaattattcaatgaacctaaaaatgtgttttttgcttataaatgtgac 5865975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 32741378 - 32741445
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||||||| ||||||| | |||||| ||||||  |||||| ||  |||||||||||||||||||    
T  32741378 tataaatgtgaccagatacaataattatttaatgaacctaaaaaattattttttgcttataaatgtga 32741445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 892610 - 892564
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||| |||||||||||||| ||||||||  ||||||||||||||    
T  892610 atacattaattattcaatgaatctaaaaagtgaatttttgcttataa 892564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 892627 - 892685
Alignment:
Q  44 actagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||   ||||||||||||||| ||||||  |||||||||||||| ||||||    
T  892627 actagatacatccgttattcaatgaattttaaaagtaaatttttgcttataattgtgac 892685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 18200722 - 18200668
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||||  ||||||||| || ||||||| || ||||||||||||||||||||    
T  18200722 agatacattagttattcaataaacttaaaaaattaatttttgcttataaatgtga 18200668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 28499842 - 28499788
Alignment:
Q  48 gatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||  ||||||||||||| |||||| ||  ||||||||||||||||||||    
T  28499842 gatacattagttattcaatgaatctaaaaaattattttttgcttataaatgtgac 28499788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 31691661 - 31691711
Alignment:
Q  63 caatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    |||||||| |||||| | |||||||||||||||||||||| |||| |||||    
T  31691661 caatgaatctaaaaaatagatttttgcttataaatgtgaccggaatgagta 31691711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 10244045 - 10244138
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||| ||| ||| ||||||||||| |||||||||| |||||||||| |  |||||||  |  ||||| ||||||||| |||| ||| ||||||    
T  10244045 taatgtatctgacctataaatgtgaatagatacattaattattcaataagcttaaaaatattttttttacttataaatatgacaggagagagta 10244138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 18551036 - 18550983
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||  ||||||||||||| |||| |||||  |||||||||||||||||||    
T  18551036 atacattagttattcaatgaatctaaacagttgtgttttgcttataaatgtgac 18550983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 20269523 - 20269588
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    ||||||| ||||||||||| || |||||| ||| |||||| ||||||||||||  |||||| ||||    
T  20269523 atacattaattattcaatgtatctaaaaaattgttttttgtttataaatgtgatcggaaagtgtat 20269588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 31785965 - 31786002
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  31785965 ttattaaatgaatttaaaaggttgatttttgcttataa 31786002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 43221629 - 43221694
Alignment:
Q  36 taaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||||| | ||||||| ||| |||||| ||  |||||||||  |||||||||||||||||||    
T  43221629 taaatgtgaccacatacattaatttttcaataaacctaaaaagttattttttgcttataaatgtga 43221694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 1138298 - 1138350
Alignment:
Q  45 ctagatacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    ||||||||||| |||||| |||||||||||||| |  |||||| |||||||||    
T  1138298 ctagatacattaattatttaatgaatttaaaaaatcaattttttcttataaat 1138350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 14751203 - 14751259
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||  | ||||||||| |  |||||||||| ||||||||||||||||||||    
T  14751203 tagatacatcaactattcaatgtacctaaaaagttgttttttgcttataaatgtgac 14751259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 25794933 - 25794905
Alignment:
Q  194 taaaattcattttttatggttataataaa 222  Q
    |||||||||||||||||||||||||||||    
T  25794933 taaaattcattttttatggttataataaa 25794905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 42364285 - 42364233
Alignment:
Q  43 gactagatacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||| ||||||| ||||||||||| |||||||||||  ||||||| ||||||    
T  42364285 gactacatacattaattattcaatgtatttaaaaagtaaatttttgtttataa 42364233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 19509343 - 19509276
Alignment:
Q  30 gacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||| ||||    
T  19509343 gacatataaatgtgaccagatacattgattattcaatgaatttaaaatgctgatttttacttacaaat 19509276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 17801448 - 17801521
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaa 107  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||| |||||| |||||||| ||| |||||    
T  17801448 tataaatgttactagatacattaattattcaatgaatctaaaaagttgttttttgattataaatatgattggaa 17801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 40992797 - 40992864
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||||||| |||| |||| ||||||||||| ||||||||||||| ||||||||| ||| |||||    
T  40992797 tataaatgtgaccagatgcattaattattcaatgtatttaaaaagttgttttttgcttgtaattgtga 40992864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 2399762 - 2399694
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    |||||||||| | ||||||||| | ||| ||||||| |||||||||||||||||||| ||| |||||||    
T  2399762 tagatacattaactattcaatgtacttagaaagttgttttttgcttataaatgtgaccggatagagtat 2399694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 29046350 - 29046405
Alignment:
Q  59 tattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||| || ||||||    
T  29046350 tatttaatgaatttaaaaaattgttttttgcttataaatgtgactgtaaggagtat 29046405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 2635659 - 2635726
Alignment:
Q  30 gacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    ||||||||||| |||| | |||||||  |||||||||| ||||||||| ||| ||||| |||||||||    
T  2635659 gacatataaatatgaccacatacattagttattcaatgtatttaaaaaattgttttttacttataaat 2635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 3485913 - 3485960
Alignment:
Q  59 tattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    |||||||||||| |||||| |||  |||||||||||||||||||||||    
T  3485913 tattcaatgaatctaaaaaattgtgttttgcttataaatgtgactgga 3485960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 12810381 - 12810311
Alignment:
Q  36 taaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||||||||   ||||||| ||||||||||| || ||||| |||| |||||| |||||||||||| ||||    
T  12810381 taaatgtgaccgaatacattaattattcaatgtatctaaaacgttggtttttggttataaatgtgattgga 12810311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 42927044 - 42926990
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgact 103  Q
    |||||||  ||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  42927044 atacattagttattcaatgaatctaagaagttgatttttgtttataaatatgact 42926990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 21955413 - 21955376
Alignment:
Q  30 gacatataaatgtgactagatacattgattattcaatg 67  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  21955413 gacatataaatgtgactggatacattaattattcaatg 21955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 35985319 - 35985267
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||  ||||||||| ||| ||||||||||  ||||||||||||||||||    
T  35985319 atacattagttattcaattaatctaaaaagttgtattttgcttataaatgtga 35985267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 36006727 - 36006675
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||  ||||||||| ||| ||||||||||  ||||||||||||||||||    
T  36006727 atacattagttattcaattaatctaaaaagttgtattttgcttataaatgtga 36006675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 36473316 - 36473264
Alignment:
Q  182 tggtttttcacataaaattcattttttatggttataataaattttgagaaaat 234  Q
    ||||| ||||||| ||||||||||||| || |||||||||| ||||| |||||    
T  36473316 tggttcttcacattaaattcattttttgtgcttataataaactttgaaaaaat 36473264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 18093866 - 18093784
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||| ||| ||| |||||||||||| ||||||||| ||||||||||| ||||||||| ||| |||||| |||||||||||||    
T  18093866 taatgtatctgacctataaatgtgacaagatacattaattattcaatgtatttaaaaatttgttttttgtttataaatgtgac 18093784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 55121240 - 55121321
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatg 115  Q
    |||||||||||| | ||||||| |||||| ||| ||| |||||||||  ||||||||||||||||||||||||| |||||||    
T  55121240 tataaatgtgaccaaatacattaattatttaataaatctaaaaagttattttttgcttataaatgtgactggaaggagtatg 55121321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 29212931 - 29212849
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||| ||| ||| ||||||||||||| |||||||||||||||||||  || ||||||  || ||||| ||||||||||||||    
T  29212931 taatgtatctgacctataaatgtgactggatacattgattattcaatatatctaaaaaaatgttttttacttataaatgtgac 29212849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 27697315 - 27697260
Alignment:
Q  59 tattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    ||||||||||||||||||| ||| ||||||||||||||||| || ||| |||||||    
T  27697315 tattcaatgaatttaaaaaattggtttttgcttataaatgttaccggagagagtat 27697260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 26602026 - 26601972
Alignment:
Q  45 ctagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgt 99  Q
    |||||||| || |||||||||||||  |||||||||| |||||||||||||||||    
T  26602026 ctagatacgttaattattcaatgaacctaaaaagttgttttttgcttataaatgt 26601972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 29014603 - 29014645
Alignment:
Q  59 tattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  29014603 tattcaatgaattaaaaaagttaatttttgcttataaatgtga 29014645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 41067719 - 41067788
Alignment:
Q  33 atataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||| ||||||| || ||||||||||| ||||||||||||  ||||| ||  ||||||||||    
T  41067719 atataaatgtgattagataccttaattattcaatgtatttaaaaagttatttttttctcgtaaatgtgac 41067788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 37914591 - 37914536
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||  |||| ||||||||||||||||||| |||||| ||| |||||||||    
T  37914591 agatacattagttatccaatgaatttaaaaagttgttttttgtttagaaatgtgac 37914536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 26331309 - 26331350
Alignment:
Q  61 ttcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  26331309 ttcaatgaacctaaaaagttgttttttgcttataaatgtgac 26331350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 28732533 - 28732464
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttga-tttttgcttataaatgtgac 102  Q
    |||||||||||||| |||||||  ||||||||||||  ||||| ||| | ||||| ||||||||||||||    
T  28732533 tataaatgtgactaaatacattagttattcaatgaacctaaaatgttaagtttttacttataaatgtgac 28732464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 29595884 - 29595950
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttga-tttttgcttataaatgtga 101  Q
    |||||||||||||||||| ||| ||||||  |||||||||||||  ||| |||||| ||||||||||||    
T  29595884 tataaatgtgactagatatattaattatttcatgaatttaaaaa--tgattttttgtttataaatgtga 29595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 16867668 - 16867624
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||    
T  16867668 ttattcaatgtacctaaaaagttgttttttgcttataaatgtgac 16867624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 30122001 - 30121957
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||||  |||||| ||||||||| ||||||||||||||    
T  30122001 ttattcaatgaacctaaaaaattgatttttacttataaatgtgac 30121957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 47250888 - 47250856
Alignment:
Q  48 gatacattgattattcaatgaatttaaaaagtt 80  Q
    |||||||||||||||||||||| ||||||||||    
T  47250888 gatacattgattattcaatgaacttaaaaagtt 47250856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 49733681 - 49733617
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||||| | |||||||| ||| |||||||||   ||||||||||||||||||| |||| |||||    
T  49733681 atacattaagtattcaataaatctaaaaagttatgttttgcttataaatgtgaccggaaggagta 49733617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 31032516 - 31032448
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||||||||||||| ||||||  |||||| |||||||||| ||||||||||| ||||||||    
T  31032516 tataaatgtgactagatacattaattatttcatgaatctaaaaagttgttttttgcttattaatgtgac 31032448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 5368841 - 5368921
Alignment:
Q  35 ataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatg 115  Q
    |||||||||||  |||||||| ||||||||||| || ||||||||| |||||||||||||||| |||| |||  |||||||    
T  5368841 ataaatgtgaccggatacattaattattcaatgcatctaaaaagttaatttttgcttataaatatgaccggagggagtatg 5368921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 1610025 - 1609958
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||||||||||||  ||| |||||||    
T  1610025 agatacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcggatagagtat 1609958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 24419612 - 24419678
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||||||| ||||||||||| |  |||||||||| |||||||||||||||||||| |||| |||||    
T  24419612 agatacattaattattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagta 24419678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 20814797 - 20814876
Alignment:
Q  21 aatgcatcagacatataaatgtgactagatacattgattattcaatgaa---tttaaaaagttgatttttgcttataaat 97  Q
    |||| ||| |||||||||||||||| ||||||||| |||||| ||||||   |||||||| ||| |||||||||||||||    
T  20814797 aatgtatctgacatataaatgtgacaagatacattaattatttaatgaatattttaaaaatttgttttttgcttataaat 20814876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 38636278 - 38636221
Alignment:
Q  59 tattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatga 116  Q
    |||||||||||| |||||||||| |||||||||||||||||||| |||  ||||||||    
T  38636278 tattcaatgaatctaaaaagttgttttttgcttataaatgtgacaggagggagtatga 38636221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 35489259 - 35489203
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||||||| || |||||||||| |||||| |||||||||||||    
T  35489259 tagatacattaattattcaatgtatctaaaaagttgttttttgattataaatgtgac 35489203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 49166686 - 49166742
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||||||| |  |||||||||| ||||||||||||||||||||    
T  49166686 tagatacattaattattcaatgtaactaaaaagttgttttttgcttataaatgtgac 49166742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 5700118 - 5700169
Alignment:
Q  52 cattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgact 103  Q
    |||| ||||||||||| | ||||||||||| |||||||||||||||||||||    
T  5700118 cattaattattcaatgtacttaaaaagttgttttttgcttataaatgtgact 5700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 8174174 - 8174229
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||| || ||||||||||| ||||||||||  |||||||||||||||||||    
T  8174174 agatacattaatcattcaatgaatataaaaagttgtgttttgcttataaatgtgac 8174229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 11900894 - 11900957
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    |||||||||||| ||||| ||| ||||||||||| || |||||||||| |||||| ||||||||    
T  11900894 tataaatgtgaccagatatattaattattcaatgtatctaaaaagttggtttttgtttataaat 11900957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 24419621 - 24419539
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||| ||| ||| ||||| | ||||| ||||||||  || |||||||||| |||||||||  ||||||||||||||||||||    
T  24419621 taatgtatctgacttataattatgactggatacattagttcttcaatgaatctaaaaagttcttttttgcttataaatgtgac 24419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 5347037 - 5346968
Alignment:
Q  33 atataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||| | |||||||| ||||||||||| || |||||||    ||||||||||||||||||||    
T  5347037 atataaatgtgaatggatacattaattattcaatgtatctaaaaagacattttttgcttataaatgtgac 5346968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 14231120 - 14231052
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||| ||||| || ||||||| || ||||||||||  |||||||||  ||||||||||||||||||||    
T  14231120 tataattgtgattaaatacattaatcattcaatgaacgtaaaaagttattttttgcttataaatgtgac 14231052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 10332096 - 10332049
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaa 96  Q
    |||||||  ||||||| |||||||||||||||| ||||||||||||||    
T  10332096 atacattagttattcattgaatttaaaaagttgttttttgcttataaa 10332049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 50403151 - 50403096
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttg-atttttgcttataaatgtga 101  Q
    |||||||||  ||||||||| ||||||||||||||  |||||||||||||||||||    
T  50403151 agatacattagttattcaataaatttaaaaagttgtgtttttgcttataaatgtga 50403096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 20273210 - 20273247
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  20273210 ttattcaatgaattaaaaaagttgttttttgcttataa 20273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 8900856 - 8900800
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||||||| |  |||||||||| || || ||||||||||||||    
T  8900856 tagatacattaattattcaatgtacctaaaaagttgtttattacttataaatgtgac 8900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 11016670 - 11016722
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||  ||||||||| ||  ||||||||||||||||| ||||||||||||    
T  11016670 atacattagttattcaataaacctaaaaagttgatttttgtttataaatgtga 11016722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 15054793 - 15054832
Alignment:
Q  57 attattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  15054793 attattcaatgaatgtaaaaagttg-tttttgcttataaat 15054832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 19175678 - 19175726
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||| ||||||| |||||||| |||||||||||||||  |||||||||    
T  19175678 ttattgaatgaatctaaaaagtagatttttgcttataatagtgactgga 19175726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 25395990 - 25395929
Alignment:
Q  36 taaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    ||||| ||| |||||||||| ||||||||||| || |||||||    |||||||||||||||||||    
T  25395990 taaatatgattagatacattaattattcaatgtatctaaaaag----tttttgcttataaatgtga 25395929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 34890236 - 34890192
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| || |||||||||| |||||||||||| |||||||    
T  34890236 ttattcaatgtatctaaaaagttgttttttgcttatatatgtgac 34890192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 36618874 - 36618942
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||| |  ||||||| ||||||||||| | ||||||| ||| ||||| ||||||||| ||||    
T  36618874 tataaatgtgattgaatacattaattattcaatgtagttaaaaaattgttttttacttataaatatgac 36618942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 50105721 - 50105681
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgattttt 87  Q
    |||||||||||||||||||||||| |||||| || ||||||    
T  50105721 agatacattgattattcaatgaatctaaaaaattaattttt 50105681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 51171346 - 51171394
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||| |||||| ||||||||||  ||||| ||||||||||||||||||    
T  51171346 ttatttaatgaacttaaaaagttattttttacttataaatgtgactgga 51171394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 20694493 - 20694428
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgt 99  Q
    ||||||||||||| |||| ||| ||||||||||| || ||||||||||||||||| ||||||||||    
T  20694493 tataaatgtgacttgataaattaattattcaatgtatctaaaaagttgatttttgtttataaatgt 20694428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 27988140 - 27988085
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  27988140 agatacattacttattcaatgaacttaaaaagttgttttttgcttataaatgtgac 27988085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 28045442 - 28045387
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  28045442 agatacattacttattcaatgaacttaaaaagttgttttttgcttataaatgtgac 28045387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 29870039 - 29869976
Alignment:
Q  155 ttggacaaaatttaggtgtatttcatctggtttttcacataaaattcattttttatggttataa 218  Q
    |||||||||| ||||||| ||||||| ||||| || ||||||||||||  ||||||||||||||    
T  29870039 ttggacaaaacttaggtgcatttcatatggttctttacataaaattcagcttttatggttataa 29869976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 44329230 - 44329159
Alignment:
Q  35 ataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||||||||| | ||||||| ||||||||||| ||||||||| |   ||||||||||||| ||||||||||    
T  44329230 ataaatgtgaccaaatacattaattattcaatgtatttaaaaaatcattttttgcttataattgtgactgga 44329159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 12354499 - 12354457
Alignment:
Q  60 attcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  12354499 attcaatgagtctaaaaagttgatttttgcttataaatgtgac 12354457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 27966394 - 27966460
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||||||| ||||||||| |||||||||||| | ||||||||||||||  ||||||  ||||||||    
T  27966394 agatacattaattattcaacgaatttaaaaagattatttttgcttataatagtgactcaaaagagta 27966460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 9503532 - 9503589
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||||| | ||||||||||||  ||||||||| ||||||||||||||||||| ||||    
T  9503532 atacattaaatattcaatgaatcgaaaaagttgttttttgcttataaatgtgaatgga 9503589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 27988145 - 27988210
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgat-ttttgcttataaatg 98  Q
    ||||||| | |||| ||||||| |||||||||||||| |||||||||| | |||||||||||||||    
T  27988145 tataaatttaactaaatacattaattattcaatgaatctaaaaagttgttgttttgcttataaatg 27988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 28045447 - 28045512
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgat-ttttgcttataaatg 98  Q
    ||||||| | |||| ||||||| |||||||||||||| |||||||||| | |||||||||||||||    
T  28045447 tataaatttaactaaatacattaattattcaatgaatctaaaaagttgttgttttgcttataaatg 28045512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 30557009 - 30557066
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    |||||||| ||||||||||||  |||||||||| |||| | |||||||||||||||||    
T  30557009 atacattggttattcaatgaacctaaaaagttgtttttcgtttataaatgtgactgga 30557066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 429832 - 429904
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    |||||||||||||  ||||||||||||||||||| || ||||||  |  |||||||||||| |||||| ||||    
T  429832 tataaatgtgactgaatacattgattattcaatgtatctaaaaaagtattttttgcttatatatgtgattgga 429904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 1784167 - 1784223
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||  ||| || |||||||||| ||||||||||||||||||||    
T  1784167 tagatacattaattattagatgtatctaaaaagttgttttttgcttataaatgtgac 1784223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 12328781 - 12328837
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgact 103  Q
    |||||||||  |||||||||| |||||||||||| ||||||| |||||||| |||||    
T  12328781 agatacattagttattcaatggatttaaaaagttaatttttgtttataaatatgact 12328837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 14578595 - 14578647
Alignment:
Q  61 ttcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    |||||||||| ||||||||||  |||||||||||||||||||| ||| |||||    
T  14578595 ttcaatgaatctaaaaagttgtattttgcttataaatgtgacttgaatgagta 14578647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 27976805 - 27976853
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||||||||    
T  27976805 agatacattaattattcaatgaatctaaaaagatcatttttgcttataa 27976853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 28034074 - 28034122
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||||| |||||||||||||| ||||||| | ||||||||||||||    
T  28034074 agatacattaattattcaatgaatctaaaaagatcatttttgcttataa 28034122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 37219340 - 37219289
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    ||||||||||  ||||||||| |||||||||  |||||||||||||||||||    
T  37219340 tagatacattttttattcaataaatttaaaattttgatttttgcttataaat 37219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 33836867 - 33836801
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||| ||| |||||||||||| | |||||||||| ||||| ||||||||| ||| ||| |||||||    
T  33836867 agatatattaattattcaatgactataaaaagttgttttttacttataaatatgattgggaagagta 33836801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 9503623 - 9503680
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||||| | |||||||||||| |||||||||  |||||| |||||||||||| ||||    
T  9503623 atacattaaatattcaatgaatctaaaaagttattttttgtttataaatgtgaatgga 9503680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 13964469 - 13964432
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  13964469 ttattgaatgaatttaaaatgttgatttttgcttataa 13964432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 24259133 - 24259189
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactg 104  Q
    ||||||||| ||| |||||||||| ||||||||||  ||||| |||||||||||||||    
T  24259133 agatacatt-attgttcaatgaatataaaaagttgtgttttgtttataaatgtgactg 24259189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 1568686 - 1568646
Alignment:
Q  195 aaaattcattttttatggttataataaattttgagaaaatt 235  Q
    ||||| ||| |||||||||||||||||||||| ||||||||    
T  1568686 aaaatacatattttatggttataataaattttaagaaaatt 1568646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 9428127 - 9428195
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||||| ||||||| |||||| |||| | |||||||  |  ||||| ||||||||||||||    
T  9428127 tataaatgtgactaaatacattaattattaaatgtacttaaaaaaatatttttttcttataaatgtgac 9428195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 10184644 - 10184684
Alignment:
Q  57 attattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    |||||||||||||| |||||||| ||||||| |||||||||    
T  10184644 attattcaatgaatctaaaaagtcgattttttcttataaat 10184684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 10839825 - 10839769
Alignment:
Q  50 tacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    |||||| |||||||||||||| ||||||||  |||||| |||||||||  |||||||    
T  10839825 tacattaattattcaatgaatctaaaaagtcaattttttcttataaataggactgga 10839769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 14578564 - 14578512
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgt 99  Q
    ||||||||| |||||||||||||  |||||  || ||||||||||||||||||    
T  14578564 agatacattaattattcaatgaacctaaaatattaatttttgcttataaatgt 14578512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 38562192 - 38562273
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatg 115  Q
    ||||||||||||  |||||||| ||||||||||| || |||||| ||| |||||||||||||||||||| |||  |||||||    
T  38562192 tataaatgtgaccggatacattaattattcaatgtatctaaaaaattgttttttgcttataaatgtgaccggagggagtatg 38562273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 30938962 - 30938916
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||    
T  30938962 atacattgtttattaaatgaatttaaaaagttgatttttccttataa 30938916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 39993118 - 39993176
Alignment:
Q  44 actagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||| ||||||| |||||||||||||| |||||||||  ||||| ||||||||||||||    
T  39993118 actaaatacattaattattcaatgaatctaaaaagttattttttacttataaatgtgac 39993176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 8311327 - 8311364
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8311327 ttattgaatgaatttaaaaagttgatttttgcttataa 8311364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 38562185 - 38562132
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||| ||||||||||| || ||| |||||| ||||||||||||||||||||    
T  38562185 atacattaattattcaatgtatctaacaagttgttttttgcttataaatgtgac 38562132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 33004230 - 33004182
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    |||||||  ||||| |||||||||||||||||| |||||||||||||||    
T  33004230 atacattatttatttaatgaatttaaaaagttgttttttgcttataaat 33004182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 44626475 - 44626531
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||||||||||||  |||||||||||   |||||||||||| |||||||    
T  44626475 tagatacattgattattcaatatatttaaaaagtcattttttgcttatatatgtgac 44626531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 20291819 - 20291776
Alignment:
Q  71 ttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    ||||||||||| |||||||||||||||||||||| || ||||||    
T  20291819 ttaaaaagttgttttttgcttataaatgtgactgaaatgagtat 20291776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 23673435 - 23673494
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||||||| ||||||||||  |  |||||||||  ||||||||||||||||||||||||    
T  23673435 agatacattaattattcaatatacctaaaaagttattttttgcttataaatgtgactgga 23673494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 23673444 - 23673367
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatg 98  Q
    ||||| ||| |||||||| ||||||| | ||||||| ||||||| ||| ||| ||||||||  ||||||||||||||||    
T  23673444 taatgtatctgacatatatatgtgaccaaatacattaattattcgatgtatt-aaaaagttattttttgcttataaatg 23673367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 19936545 - 19936508
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  19936545 ttattcaatgaatctaaaaagttgatttttgtttataa 19936508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 51303870 - 51303911
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaa 75  Q
    ||||||||||||||||||||||  ||||||||||||| ||||    
T  51303870 tataaatgtgactagatacattagttattcaatgaatctaaa 51303911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 6371993 - 6372061
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    ||||||||||  ||||| |||| |  |||||| ||| ||||||||||||||| ||||||||| ||||||    
T  6371993 tagatacattagttattaaatgtacctaaaaaattgttttttgcttataaatatgactggaaggagtat 6372061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 7277478 - 7277418
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttg-atttttgcttataaatgtgactgga 106  Q
    |||||||||  ||||||||||||  ||||||||||  |||||||||||||||||| |||||    
T  7277478 agatacattagttattcaatgaacctaaaaagttgtttttttgcttataaatgtgtctgga 7277418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 7277506 - 7277554
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||||||| || ||||||||| | |||| |||||||||||||||||||    
T  7277506 ttattcaataaacttaaaaagtcgtttttcgcttataaatgtgactgga 7277554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 10065128 - 10065072
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||  ||| |  |||||||||| ||||||||||||||||||||    
T  10065128 tagatacattaattattggatgtacctaaaaagttgttttttgcttataaatgtgac 10065072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 20783762 - 20783682
Alignment:
Q  35 ataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatg 115  Q
    ||||||||||  ||||||||| ||||||||||| | |||||||||   |||||  |||||||||||| |||| | ||||||    
T  20783762 ataaatgtgatcagatacattaattattcaatgtacttaaaaagtcattttttatttataaatgtgattggagaaagtatg 20783682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 22720571 - 22720519
Alignment:
Q  43 gactagatacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||||||||| ||||||||||| || |||||||| || ||||| ||||||    
T  22720571 gactagatacattaattattcaatgtatctaaaaagtggaattttgtttataa 22720519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 24100824 - 24100776
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||||| |||||||||||||| ||||||||| ||| || |||||||    
T  24100824 agatacattaattattcaatgaatctaaaaagttaattatttcttataa 24100776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 24100887 - 24100935
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||||||| |||||||||||||| ||||||||| ||| || |||||||    
T  24100887 agatacattaattattcaatgaatctaaaaagttaattatttcttataa 24100935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 33508613 - 33508665
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||  ||||||||||||| ||| ||||||  ||||||||||||||||||    
T  33508613 atacattagttattcaatgaatctaacaagttgtgttttgcttataaatgtga 33508665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 52840330 - 52840274
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| |||||| |||| | ||||||| ||  ||||||||||||||||||||    
T  52840330 tagatacattaattatttaatgtacttaaaaaattattttttgcttataaatgtgac 52840274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 53225729 - 53225777
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    ||||||| |||||||||||||| ||||||||  |||||| |||||||||    
T  53225729 atacattaattattcaatgaatctaaaaagtcaattttttcttataaat 53225777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 17621157 - 17621089
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||| ||||| ||||| | | ||||||||||||||||||||||||| |||||| |||||||||||||    
T  17621157 tataaaagtgaccagatataataattattcaatgaatttaaaaagttgttttttgtttataaatgtgac 17621089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 9113986 - 9114056
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaa--gttgatttttgcttataaatgtgac 102  Q
    |||||||||||||||||||||| |||||||||||||| ||||||   | | ||||||||||||||||||||    
T  9113986 tataaatgtgactagatacattaattattcaatgaatctaaaaaatatagttttttgcttataaatgtgac 9114056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 32516215 - 32516279
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagta 113  Q
    ||||||| ||||||||||||||||||||| |||  |||| |||||||||||||| |||| |||||    
T  32516215 atacattaattattcaatgaatttaaaaaattgtgttttacttataaatgtgacaggaaggagta 32516279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 29168579 - 29168634
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||| |||||| |||| ||||||||||||  ||||||||||||||||||||    
T  29168579 agatacattaattatttaatgtatttaaaaagttattttttgcttataaatgtgac 29168634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 30429130 - 30429075
Alignment:
Q  47 agatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||| |||||| ||||||  |||||||||| ||||||||||||||||||||    
T  30429130 agatacattaattattgaatgaacctaaaaagttgttttttgcttataaatgtgac 30429075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 41517431 - 41517498
Alignment:
Q  35 ataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||   |||||||| ||||||||||| | ||||||||||  ||||||||||||||||||||    
T  41517431 ataaatgtgatcggatacattaattattcaatgtacttaaaaagttattttttgcttataaatgtgac 41517498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 31719240 - 31719187
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||  ||||||||||||| |||||||||| ||||| ||||||||||||||    
T  31719240 atacatttgttattcaatgaatctaaaaagttgttttttacttataaatgtgac 31719187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 11565059 - 11565007
Alignment:
Q  50 tacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||| ||||||||||| || ||||| |||| ||||||||||||||||||||    
T  11565059 tacattaattattcaatgtatctaaaatgttgttttttgcttataaatgtgac 11565007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 29765754 - 29765798
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||    
T  29765754 ttattcaatgaatctaaaaagttgatttttggttataattgtgac 29765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 8996828 - 8996899
Alignment:
Q  43 gactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtat 114  Q
    ||||| ||||||||||||||||||| || || ||||| || ||||||||||||  ||||| ||| |||||||    
T  8996828 gactatatacattgattattcaatgtatctagaaagtagagttttgcttataatagtgaccggagagagtat 8996899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 40442584 - 40442533
Alignment:
Q  182 tggtttttcacataaaattcattttttatggttataataaattttgagaaaa 233  Q
    ||||| ||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  40442584 tggttcttcacataaaattcattttgtgtggttataacaaaatttgagaaaa 40442533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 40503741 - 40503690
Alignment:
Q  182 tggtttttcacataaaattcattttttatggttataataaattttgagaaaa 233  Q
    ||||| ||||||||||||||||||| | ||||||||| ||| ||||||||||    
T  40503741 tggttcttcacataaaattcattttgtgtggttataacaaaatttgagaaaa 40503690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 36129242 - 36129280
Alignment:
Q  57 attattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  36129242 attattcaatgaatttaaaaagtgtatttttgcttataa 36129280  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 36447040 - 36447002
Alignment:
Q  59 tattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  36447040 tatttaataaatttaaaaagttgatttttgcttataaat 36447002  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 19268110 - 19268073
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  19268110 ttattgaatgaacttaaaaagttgatttttgcttataa 19268073  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 41253785 - 41253717
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||  ||||||||| ||| |||||||| |||| ||| ||| ||||| ||||||||| ||||    
T  41253785 tataaatgtgatgagatacattaattgttcaatgagtttagaaaattgttttttacttataaatatgac 41253717  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 5070000 - 5069947
Alignment:
Q  48 gatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||| ||||||||||| || |||||||||| |||||||||||||||||||    
T  5070000 gatacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtga 5069947  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 674140 - 674184
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||    
T  674140 ttattcaatgaatctaaaaaattgttttttgcttataaatgtgac 674184  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 14093146 - 14093095
Alignment:
Q  43 gactagatacattgattattcaatgaatttaaaaagttgatttttgcttata 94  Q
    ||||||||||||| |||||| |||| |||||||||||||| |||| ||||||    
T  14093146 gactagatacattaattatttaatgtatttaaaaagttgagtttttcttata 14093095  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 28083437 - 28083379
Alignment:
Q  20 taatgcatcagacatataaatgtgactagatacattgattattcaatgaatttaaaaagt 79  Q
    |||||||||||||||||||| ||||  ||||| | |||||||||||||||| ||||||||    
T  28083437 taatgcatcagacatataaa-gtgataagatataatgattattcaatgaatctaaaaagt 28083379  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 10355929 - 10355899
Alignment:
Q  72 taaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||||||||||||||||||||||||    
T  10355929 taaaaagttgatttttgcttataaatgtgac 10355899  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 690960 - 691033
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttg-atttttgcttataaatgtgactgga 106  Q
    ||||||||||| || | | |||  ||||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  690960 tataaatgtgattatacatattagttattcaatgaatttaaaaagttgtttttttgtttataaatttgactgga 691033  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 3846490 - 3846437
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||  |||||||||||| ||||||| ||  ||||||||||||||||||||    
T  3846490 atacattatttattcaatgaacttaaaaaattattttttgcttataaatgtgac 3846437  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 16121055 - 16121092
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataa 95  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  16121055 ttatttaatgaatctaaaaagttgatttttgcttataa 16121092  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 34803584 - 34803519
Alignment:
Q  34 tataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgt 99  Q
    ||||||||||||||||||  || ||||||| ||||| |||||||  ||  ||||||||||||||||    
T  34803584 tataaatgtgactagatatgttaattattccatgaacttaaaaaactgtgttttgcttataaatgt 34803519  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 862900 - 862955
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||||||| || ||||||  || ||||||||||||||||||||    
T  862900 tagatacattaattattcaatgtatctaaaaa-atgttttttgcttataaatgtgac 862955  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 2271218 - 2271258
Alignment:
Q  61 ttcaatgaatttaaaaagttgatttttgcttataaatgtga 101  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  2271218 ttcaatgaatctaaaaagttattttttgcttataaatgtga 2271258  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 3203761 - 3203809
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgactgga 106  Q
    ||||| ||||||  ||||||||||||||||||||||||  |||||||||    
T  3203761 ttattaaatgaacctaaaaagttgatttttgcttataatagtgactgga 3203809  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 9605426 - 9605378
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaat 97  Q
    ||||||| | |||||||| || ||||||||||| |||||||||||||||    
T  9605426 atacattaagtattcaattaaattaaaaagttgttttttgcttataaat 9605378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 24252959 - 24253015
Alignment:
Q  46 tagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||||| ||||||||||| |  |||||||||  ||||||||||||||| ||||    
T  24252959 tagatacattaattattcaatgtacctaaaaagttattttttgcttataaatatgac 24253015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 33123076 - 33123040
Alignment:
Q  43 gactagatacattgattattcaatgaatttaaaaagt 79  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  33123076 gactagatacattaattattcaatgtatttaaaaagt 33123040  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 320761 - 320819
Alignment:
Q  58 ttattcaatgaatttaaaaagttgatttttgcttataaatgtgactggaaagagtatga 116  Q
    ||||| ||||||| ||||||||||  |||||||||||||||||| ||||  ||||||||    
T  320761 ttatttaatgaatctaaaaagttgtgttttgcttataaatgtgattggagggagtatga 320819  T

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Target: scaffold0777 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 4771 - 4718
Alignment:
Q  49 atacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    |||||||  ||||||||||||||||||||||||  |||||||| || |||||||    
T  4771 atacattagttattcaatgaatttaaaaagttgtgttttgcttgtatatgtgac 4718  T

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Target: scaffold0777; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 4777 - 4846
Alignment:
Q  33 atataaatgtgactagatacattgattattcaatgaatttaaaaagttgatttttgcttataaatgtgac 102  Q
    ||||||||||||||||||||||| ||||||| || ||  ||||||   | ||||||||||||||| ||||    
T  4777 atataaatgtgactagatacattaattattccataaacctaaaaaacggttttttgcttataaatatgac 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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