View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6843_low_9 (Length: 230)

Name: NF6843_low_9
Description: NF6843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6843_low_9
NF6843_low_9
[»] chr1 (33 HSPs)
chr1 (40-125)||(2218264-2218347)
chr1 (42-92)||(16297223-16297273)
chr1 (37-126)||(22881564-22881651)
chr1 (40-126)||(113323-113412)
chr1 (37-83)||(22947806-22947852)
chr1 (42-92)||(42359391-42359441)
chr1 (41-102)||(10233313-10233374)
chr1 (39-83)||(7918153-7918197)
chr1 (40-76)||(18556385-18556421)
chr1 (38-89)||(9828125-9828176)
chr1 (42-89)||(17778623-17778670)
chr1 (41-84)||(40258874-40258917)
chr1 (38-89)||(40917830-40917881)
chr1 (40-90)||(9630561-9630611)
chr1 (38-84)||(21365990-21366036)
chr1 (88-126)||(24577183-24577221)
chr1 (88-126)||(47989521-47989559)
chr1 (39-68)||(13436534-13436563)
chr1 (31-76)||(15765841-15765886)
chr1 (39-76)||(37598914-37598951)
chr1 (45-89)||(1209823-1209867)
chr1 (94-126)||(1815281-1815313)
chr1 (88-124)||(6612168-6612204)
chr1 (94-126)||(18337353-18337385)
chr1 (40-84)||(22515827-22515871)
chr1 (94-126)||(22515890-22515922)
chr1 (86-126)||(25272506-25272546)
chr1 (40-76)||(32461393-32461429)
chr1 (40-76)||(35702542-35702578)
chr1 (40-88)||(38078601-38078649)
chr1 (94-126)||(40258936-40258968)
chr1 (40-76)||(47989591-47989627)
chr1 (94-126)||(51410049-51410081)
[»] chr6 (26 HSPs)
chr6 (41-126)||(31959183-31959268)
chr6 (43-126)||(9025448-9025529)
chr6 (38-89)||(28715365-28715416)
chr6 (40-126)||(9911482-9911563)
chr6 (49-124)||(21395262-21395341)
chr6 (38-78)||(4878023-4878063)
chr6 (40-126)||(28152122-28152217)
chr6 (94-125)||(32978902-32978933)
chr6 (94-124)||(6898284-6898314)
chr6 (88-126)||(10770671-10770709)
chr6 (88-126)||(16766721-16766759)
chr6 (38-76)||(17327588-17327626)
chr6 (40-69)||(6389822-6389851)
chr6 (87-124)||(7973680-7973717)
chr6 (39-76)||(8805523-8805560)
chr6 (94-126)||(426517-426549)
chr6 (94-126)||(853862-853894)
chr6 (94-126)||(4877967-4877999)
chr6 (40-84)||(7378054-7378098)
chr6 (47-126)||(7930329-7930413)
chr6 (37-89)||(8365445-8365497)
chr6 (37-69)||(8776905-8776937)
chr6 (40-92)||(9107299-9107351)
chr6 (94-126)||(9522915-9522947)
chr6 (40-76)||(32839571-32839607)
chr6 (94-126)||(34595158-34595190)
[»] chr8 (19 HSPs)
chr8 (39-126)||(8342996-8343087)
chr8 (40-84)||(15816058-15816102)
chr8 (40-126)||(25566865-25566949)
chr8 (38-83)||(27213601-27213646)
chr8 (40-89)||(36450694-36450743)
chr8 (94-126)||(24613544-24613576)
chr8 (37-89)||(29510230-29510282)
chr8 (40-76)||(39820511-39820547)
chr8 (42-89)||(44067597-44067644)
chr8 (88-126)||(2572053-2572091)
chr8 (40-126)||(13436910-13436999)
chr8 (40-90)||(22652056-22652106)
chr8 (41-83)||(29447040-29447082)
chr8 (94-126)||(4948676-4948708)
chr8 (40-84)||(17751731-17751775)
chr8 (40-84)||(17760718-17760762)
chr8 (94-126)||(20873093-20873125)
chr8 (40-68)||(24413499-24413527)
chr8 (94-126)||(40332215-40332247)
[»] chr4 (26 HSPs)
chr4 (40-126)||(42640553-42640643)
chr4 (7-126)||(2625927-2626050)
chr4 (38-126)||(11596295-11596387)
chr4 (37-92)||(18513172-18513227)
chr4 (40-89)||(23292926-23292975)
chr4 (40-124)||(37203290-37203371)
chr4 (41-89)||(3947702-3947750)
chr4 (39-126)||(5775303-5775393)
chr4 (94-126)||(6879468-6879500)
chr4 (40-76)||(18844423-18844459)
chr4 (36-75)||(3064864-3064903)
chr4 (38-89)||(22234817-22234868)
chr4 (42-89)||(22440559-22440606)
chr4 (37-84)||(53381527-53381574)
chr4 (38-124)||(20633508-20633592)
chr4 (40-69)||(3144587-3144616)
chr4 (38-83)||(24613628-24613673)
chr4 (36-69)||(35161126-35161159)
chr4 (40-76)||(715545-715581)
chr4 (40-76)||(752871-752907)
chr4 (94-126)||(6485614-6485646)
chr4 (40-84)||(8423658-8423702)
chr4 (94-126)||(12797341-12797373)
chr4 (40-76)||(28470448-28470484)
chr4 (94-126)||(29205468-29205500)
chr4 (39-83)||(40784029-40784073)
[»] chr7 (23 HSPs)
chr7 (40-84)||(21880227-21880271)
chr7 (40-89)||(598278-598327)
chr7 (37-89)||(5409768-5409820)
chr7 (40-90)||(1433528-1433578)
chr7 (40-89)||(29763129-29763178)
chr7 (38-83)||(35862027-35862072)
chr7 (37-89)||(9778575-9778627)
chr7 (47-126)||(18215144-18215221)
chr7 (40-76)||(29812598-29812634)
chr7 (88-126)||(2334274-2334312)
chr7 (88-126)||(18039023-18039061)
chr7 (88-126)||(24339666-24339704)
chr7 (40-89)||(6490786-6490835)
chr7 (40-89)||(30813867-30813916)
chr7 (39-124)||(35749922-35750007)
chr7 (40-89)||(43027404-43027453)
chr7 (94-126)||(9408337-9408369)
chr7 (94-126)||(21560527-21560559)
chr7 (40-84)||(24339728-24339772)
chr7 (88-124)||(27945067-27945103)
chr7 (41-89)||(32287404-32287452)
chr7 (44-84)||(40287306-40287346)
chr7 (45-89)||(43250074-43250118)
[»] chr2 (15 HSPs)
chr2 (45-126)||(23058389-23058477)
chr2 (37-89)||(37419824-37419876)
chr2 (40-83)||(10535685-10535728)
chr2 (42-84)||(2438661-2438703)
chr2 (94-124)||(18841016-18841046)
chr2 (38-88)||(37497192-37497242)
chr2 (95-124)||(6940281-6940310)
chr2 (40-89)||(18420363-18420412)
chr2 (40-89)||(26769592-26769641)
chr2 (40-89)||(38117099-38117148)
chr2 (94-126)||(2438722-2438754)
chr2 (94-126)||(18421987-18422019)
chr2 (40-84)||(18840953-18840997)
chr2 (94-126)||(19536400-19536432)
chr2 (36-68)||(21616836-21616868)
[»] scaffold0003 (1 HSPs)
scaffold0003 (40-89)||(241675-241724)
[»] chr5 (21 HSPs)
chr5 (38-126)||(43564905-43565002)
chr5 (38-69)||(7218216-7218247)
chr5 (39-82)||(14873599-14873642)
chr5 (40-89)||(2436981-2437030)
chr5 (39-76)||(10298633-10298670)
chr5 (42-126)||(21190998-21191091)
chr5 (94-126)||(6247646-6247678)
chr5 (37-69)||(6247700-6247732)
chr5 (39-83)||(6326252-6326296)
chr5 (94-126)||(15884012-15884044)
chr5 (40-76)||(17123130-17123166)
chr5 (40-84)||(19820328-19820372)
chr5 (94-126)||(21351908-21351940)
chr5 (88-124)||(21542056-21542092)
chr5 (40-76)||(21576685-21576721)
chr5 (40-76)||(22423764-22423800)
chr5 (94-126)||(33178049-33178081)
chr5 (40-76)||(35017126-35017162)
chr5 (40-84)||(39698627-39698671)
chr5 (42-126)||(41995495-41995581)
chr5 (42-82)||(43001882-43001922)
[»] chr3 (24 HSPs)
chr3 (41-118)||(25211571-25211648)
chr3 (42-126)||(25775533-25775624)
chr3 (38-89)||(41961577-41961628)
chr3 (41-91)||(1389906-1389956)
chr3 (88-126)||(27505270-27505308)
chr3 (40-90)||(34185052-34185102)
chr3 (38-84)||(49651714-49651760)
chr3 (40-124)||(4990912-4991000)
chr3 (40-89)||(27505321-27505370)
chr3 (94-126)||(8587024-8587056)
chr3 (37-89)||(40052382-40052434)
chr3 (50-126)||(1509563-1509643)
chr3 (40-83)||(20503541-20503584)
chr3 (42-89)||(24204983-24205030)
chr3 (39-70)||(27903727-27903758)
chr3 (40-126)||(55401099-55401194)
chr3 (37-83)||(14979225-14979271)
chr3 (38-84)||(40993273-40993319)
chr3 (40-69)||(17276817-17276846)
chr3 (93-126)||(26508134-26508167)
chr3 (89-126)||(28918025-28918062)
chr3 (37-69)||(14209214-14209246)
chr3 (41-69)||(14216993-14217021)
chr3 (41-69)||(14223122-14223150)
[»] scaffold0007 (1 HSPs)
scaffold0007 (42-89)||(225199-225246)
[»] scaffold0009 (1 HSPs)
scaffold0009 (47-115)||(188446-188512)
[»] scaffold0025 (1 HSPs)
scaffold0025 (86-126)||(23794-23834)
[»] scaffold0020 (1 HSPs)
scaffold0020 (40-126)||(135263-135347)
[»] scaffold0168 (2 HSPs)
scaffold0168 (37-75)||(21114-21152)
scaffold0168 (37-75)||(21372-21410)
[»] scaffold0044 (1 HSPs)
scaffold0044 (88-126)||(53204-53242)
[»] scaffold0004 (2 HSPs)
scaffold0004 (41-83)||(92898-92940)
scaffold0004 (94-126)||(123652-123684)
[»] scaffold0475 (1 HSPs)
scaffold0475 (39-76)||(3391-3428)
[»] scaffold0086 (1 HSPs)
scaffold0086 (40-89)||(3009-3058)
[»] scaffold0021 (1 HSPs)
scaffold0021 (93-126)||(130506-130539)
[»] scaffold0793 (1 HSPs)
scaffold0793 (40-76)||(4821-4857)
[»] scaffold0652 (1 HSPs)
scaffold0652 (41-89)||(403-451)
[»] scaffold0236 (1 HSPs)
scaffold0236 (86-126)||(25763-25803)
[»] scaffold0019 (1 HSPs)
scaffold0019 (37-89)||(71806-71858)
[»] scaffold0011 (1 HSPs)
scaffold0011 (94-126)||(17752-17784)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 2218347 - 2218264
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtg 125  Q
    |||||||||||||||||| ||| |||||||| |||||| |||||| ||||  | |||||||||||||||||||||| |||||||||    
T  2218347 ctatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacac--gacaccgacacttgtaattacactaaattatgtg 2218264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 16297223 - 16297273
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 92  Q
    |||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacacacg 16297273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 22881564 - 22881651
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||||||| |||||||||| | ||||| |||||||      || |||||||||||||||||||||| ||||||||||    
T  22881564 aacctatgaagcacggacactcctcggattagacgtgtcccggtgtcg--tgtccgacaccgacacttgtaattacactaaattatgtga 22881651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 113412 - 113323
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac---acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||| || |||| |||||||||||| ||||| ||||| | ||||   ||| |||| ||||||||||||||||| ||||||||||    
T  113412 ctatgaagcatgggcactcctcggattaggcgtgtcccggtgttggacacgacacgacacctacacttgtaattacactgaattatgtga 113323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 22947852 - 22947806
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  22947852 aacctatgaagcacggacactcctcggattaggcgtgtccaggtgtc 22947806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 42359391 - 42359441
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 92  Q
    |||||||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacg 42359441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 10233374 - 10233313
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacac 102  Q
    ||||||||||||||||| ||| |||||||  ||||||||||||| ||||| | |||||||||    
T  10233374 tatgaagcacggacactcctctgattaggtgtgtcctggtgtcggacacatgacaccgacac 10233313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 7918153 - 7918197
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  7918153 cctatgaagcacggacactcctcggattaggtgtgtcctggtgtc 7918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 18556385 - 18556421
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcc 18556421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 9828176 - 9828125
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||||| |||||||||| | ||||| ||||||| ||||    
T  9828176 acctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 9828125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 17778670 - 17778623
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||| |||||||||||||||||| ||||| ||||||| ||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacac 17778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 40258874 - 40258917
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcg 40258917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 40917881 - 40917830
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| | |||||||||||| ||||| ||||||| ||||    
T  40917881 acctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacac 40917830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 9630561 - 9630611
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 90  Q
    |||||||||||| ||||| |||||||||||| |||||| |||| |||||||    
T  9630561 ctatgaagcacgaacactcctcggattaggcgtgtcctcgtgttgaacaca 9630611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 21365990 - 21366036
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||||||| |||||||||||| ||||  |||||||    
T  21365990 acctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 21366036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 24577183 - 24577221
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  24577183 acacgacaccgacacttgtaattacactgaattatgtga 24577221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 47989559 - 47989521
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  47989559 acacgacaccgacacttgtaattacactgaattatgtga 47989521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 13436563 - 13436534
Alignment:
Q  39 cctatgaagcacggacacttctcggattag 68  Q
    ||||||||||||||||||||||||||||||    
T  13436563 cctatgaagcacggacacttctcggattag 13436534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 15765886 - 15765841
Alignment:
Q  31 gtttcaaacctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||| |||||||||||||||||||||  ||||||||||| |||||    
T  15765886 gtttctaacctatgaagcacggacactcttcggattaggcgtgtcc 15765841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 37598951 - 37598914
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  37598951 cctatgaagcacggacactcctcggattaggcgtgtcc 37598914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 1209867 - 1209823
Alignment:
Q  45 aagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  1209867 aagcacgaacacttctcggattaggtgtgtcctggtgtcggacac 1209823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 1815313 - 1815281
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  1815313 caccgacacttgtaattacactgaattatgtga 1815281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 6612168 - 6612204
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgt 124  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  6612168 acacgacaccgacacttgtaattacactgaattatgt 6612204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 18337385 - 18337353
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  18337385 caccgacacttgtaattacactgaattatgtga 18337353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 22515827 - 22515871
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 22515871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 22515890 - 22515922
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  22515890 caccgacacttgtaattacactaaattatgtga 22515922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 25272546 - 25272506
Alignment:
Q  86 acacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||| ||||||||||| |||||||||| ||||||||||    
T  25272546 acacacgacaccgacacttataattacactaaattatgtga 25272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 32461393 - 32461429
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcc 32461429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 35702542 - 35702578
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  35702542 ctatgaagcacggacactcctcggattaggcgtgtcc 35702578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 38078601 - 38078649
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaaca 88  Q
    |||||||||||| | ||| |||||||||||| ||||||||||| |||||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaaca 38078649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 40258936 - 40258968
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  40258936 caccgacacttgtaattacactgaattatgtga 40258968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 47989627 - 47989591
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcc 47989591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 51410081 - 51410049
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  51410081 caccgacacttgtaattacactgaattatgtga 51410049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 31959268 - 31959183
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||| ||||| | | ||||||||||||||||||||  |||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacatgtcgccgacacttgtaattacactgcattatgtga 31959183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 9025448 - 9025529
Alignment:
Q  43 tgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||||||||| ||||| |||||||   ||||| ||||||||| | |||||||||| ||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcg--gacacgacaccgacacatataattacactgaattatgtga 9025529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 28715416 - 28715365
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
T  28715416 acctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacac 28715365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 9911482 - 9911563
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||| | ||||| |||||||||||| |||||||||       ||||| |||||||||||||||||||||| ||||||||||    
T  9911482 ctatgaagcatgaacactcctcggattaggcgtgtcctggttg-----acacgacaccgacacttgtaattacactgaattatgtga 9911563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 21395262 - 21395341
Alignment:
Q  49 acggacacttctcggattaggcttgtcctggtgtcgaac----acacggcaccgacacttgtaattacacttaattatgt 124  Q
    ||||||||| || ||||||||| ||||||||||||  ||    ||||| |||||||||||||||||||||| ||||||||    
T  21395262 acggacactccttggattaggcgtgtcctggtgtccgacactgacacgacaccgacacttgtaattacactaaattatgt 21395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 4878063 - 4878023
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctg 78  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  4878063 acctatgaagcacggacactcctcggattaggcgtgtcctg 4878023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 28152217 - 28152122
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac---------acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||| ||||| |||||||||||| ||||| ||||||| ||||          || |||||||||||||||||||||| ||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtga 28152122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 125
Target Start/End: Original strand, 32978902 - 32978933
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtg 125  Q
    ||||||||||||||||||||||||||||||||    
T  32978902 caccgacacttgtaattacacttaattatgtg 32978933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 6898284 - 6898314
Alignment:
Q  94 caccgacacttgtaattacacttaattatgt 124  Q
    |||||||||||||||||||||||||||||||    
T  6898284 caccgacacttgtaattacacttaattatgt 6898314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 10770671 - 10770709
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  10770671 acacgacaccgacacttgtaattacactgaattatgtga 10770709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 16766759 - 16766721
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  16766759 acacgacaccgacacttgtaattacactgaattatgtga 16766721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 17327588 - 17327626
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  17327588 acctatgaagcacggacactcctcggattaggcgtgtcc 17327626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 6389851 - 6389822
Alignment:
Q  40 ctatgaagcacggacacttctcggattagg 69  Q
    ||||||||||||||||||||||||||||||    
T  6389851 ctatgaagcacggacacttctcggattagg 6389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 7973717 - 7973680
Alignment:
Q  87 cacacggcaccgacacttgtaattacacttaattatgt 124  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  7973717 cacacgacaccgacacttataattacacttaattatgt 7973680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 8805523 - 8805560
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  8805523 cctatgaagcacggacactcctcggattaggcatgtcc 8805560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 426517 - 426549
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||| ||||||||||||    
T  426517 caccgacacttgtaattacatttaattatgtga 426549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 853862 - 853894
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||| |||||||||||||||    
T  853862 caccgacacttgtaattgcacttaattatgtga 853894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 4877999 - 4877967
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||| ||||||||||||||    
T  4877999 caccgacacttgtaattatacttaattatgtga 4877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 7378098 - 7378054
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||||||||| |||||| | ||||| |||||||    
T  7378098 ctatgaagcacggacacttctcagattagccgtgtcccggtgtcg 7378054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 7930413 - 7930329
Alignment:
Q  47 gcacggacacttctcggattaggcttgtcctggtgtcgaac-----acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| ||||| |||| ||||||| ||||||||||||| ||     ||||| |||||||||||| |||| |||| ||||||||||    
T  7930413 gcacgaacactcctcgaattaggcgtgtcctggtgtcggacacgtgacacgacaccgacacttgaaatttcactaaattatgtga 7930329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 8365445 - 8365497
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||| ||| |||||||||||| |||||  |||||| ||||    
T  8365445 aacctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacac 8365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 8776905 - 8776937
Alignment:
Q  37 aacctatgaagcacggacacttctcggattagg 69  Q
    ||||||||||||||||||||| |||||||||||    
T  8776905 aacctatgaagcacggacactcctcggattagg 8776937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 9107299 - 9107351
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 92  Q
    ||||||||||||| |||| |||||||||||  ||||| ||||||| |||||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacg 9107351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 9522947 - 9522915
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  9522947 caccgacacttgtaattacactgaattatgtga 9522915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 32839571 - 32839607
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  32839571 ctatgaagcacagacacttctcggattaggcgtgtcc 32839607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 34595190 - 34595158
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  34595190 caccgacacttgtaattacactgaattatgtga 34595158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 8343087 - 8342996
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca----cggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||| ||||||  ||||||||||| ||||| ||||||| |||||    || |||||||||||||||||||||| ||||||||||    
T  8343087 cctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgtacgacaccgacacttgtaattacactaaattatgtga 8342996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 15816058 - 15816102
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcg 15816102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 25566949 - 25566865
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||| |||||| |||||||||||| ||||| ||   | |||||  | |||||||||||||||||||||| ||||||||||    
T  25566949 ctatgaagcacagacactcctcggattaggcgtgtcccggacaccaacac--gacaccgacacttgtaattacactgaattatgtga 25566865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 27213646 - 27213601
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||    
T  27213646 acctatgaagcacggacacttctcggattagccgtgtcccggtgtc 27213601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 36450694 - 36450743
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||| ||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 24613576 - 24613544
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||||||||||||||    
T  24613576 caccgacacttgtaattacacttaattatgtga 24613544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 29510230 - 29510282
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||| |||||||||||  ||||| ||||||| ||||    
T  29510230 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 29510282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 39820547 - 39820511
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcc 39820511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 44067644 - 44067597
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 44067597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 2572053 - 2572091
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  2572053 acacgacaccgacacttgtaattacactaaattatgtga 2572091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 13436910 - 13436999
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcga-ac--acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||| |||||| || ||||||||| ||||| |||||||| ||  ||||| ||||||||||||| |||||  | ||||||||||    
T  13436910 ctatgaagcacagacactccttggattaggcgtgtcccggtgtcgacaccgacacgacaccgacacttgttattaccatgaattatgtga 13436999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 22652106 - 22652056
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 90  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||| |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacaca 22652056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 29447040 - 29447082
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||| || ||||||||| ||||||||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtc 29447082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 4948708 - 4948676
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  4948708 caccgacacttgtaattacactgaattatgtga 4948676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 17751775 - 17751731
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcg 17751731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 17760762 - 17760718
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcg 17760718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 20873125 - 20873093
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  20873125 caccgacacttgtaattacactaaattatgtga 20873093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 24413499 - 24413527
Alignment:
Q  40 ctatgaagcacggacacttctcggattag 68  Q
    |||||||||||||||||||||||||||||    
T  24413499 ctatgaagcacggacacttctcggattag 24413527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 40332247 - 40332215
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  40332247 caccgacacttgtaattacactgaattatgtga 40332215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 42640643 - 42640553
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac----acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || ||||     || |||||||||||||||||||||| ||||||||||    
T  42640643 ctatgaagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtccgacaccgacacttgtaattacactgaattatgtga 42640553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 2625927 - 2626050
Alignment:
Q  7 atggacatcagaatgagattttgggtttcaaacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaaca-----cacggcaccgaca 101  Q
    |||||||| ||||||||| |||||| ||||| ||||||||||||||| ||| || | ||||||| ||||||| ||||| |||     || ||||||||||    
T  2625927 atggacataagaatgagaatttgggcttcaa-cctatgaagcacggatactccttgaattaggcgtgtcctgatgtcggacacgcggcatggcaccgaca 2626025  T
Q  102 cttgtaattacacttaattatgtga 126  Q
    | |||||||||||  ||||||||||    
T  2626026 cgtgtaattacaccgaattatgtga 2626050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 11596295 - 11596387
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaac----acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||| ||| |||||||| ||||| | ||||| ||    ||||| |||| ||||||||||||||||| ||||||||||    
T  11596295 acctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaattatgtga 11596387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 18513172 - 18513227
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 92  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  18513172 aacctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacg 18513227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 23292926 - 23292975
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 23292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 37203371 - 37203290
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgt 124  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||   || || || | ||||||||||||||||| ||||||||    
T  37203371 ctatgaagcacggacacttctcggattagacgtgtcccggtgtcg--gacccgaca-ctacacttgtaattacactaaattatgt 37203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 3947702 - 3947750
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||| |||||||||||  ||||||||||||| ||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacac 3947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 5775303 - 5775393
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaac---acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||||| |||||||||||| ||||| || |  | ||   ||| | ||||||||| | |||||||||||||||||||||    
T  5775303 cctatgaagcacggacactcctcggattaggcgtgtcccggcggtggacacgacatgacaccgacacatataattacacttaattatgtga 5775393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 6879468 - 6879500
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||||||||||||||    
T  6879468 caccgacacttgtaattacacttaattatgtga 6879500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 18844423 - 18844459
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtcc 18844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 3064864 - 3064903
Alignment:
Q  36 aaacctatgaagcacggacacttctcggattaggcttgtc 75  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  3064864 aaacctatgaagcacggacactcctcggattaggcgtgtc 3064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 22234817 - 22234868
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||| ||||||||||||||||   ||||||||||||| ||||    
T  22234817 acctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacac 22234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 22440559 - 22440606
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||| |||||||||||| |||||| |||||| ||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacac 22440606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 53381527 - 53381574
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||||||||||||||| |||||||||||  ||||| |||||||    
T  53381527 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcg 53381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 20633592 - 20633508
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgt 124  Q
    |||||||||||||| ||||| || ||||||||| |||| |||||||  |||| || || ||||||||||||||||| | ||||||||    
T  20633592 acctatgaagcacgaacactccttggattaggcgtgtcttggtgtccgacac-cgaca-cgacacttgtaattacattgaattatgt 20633508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 3144587 - 3144616
Alignment:
Q  40 ctatgaagcacggacacttctcggattagg 69  Q
    ||||||||||||||||||||||||||||||    
T  3144587 ctatgaagcacggacacttctcggattagg 3144616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 24613628 - 24613673
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||    
T  24613628 acctatgaagcacggacactcctaggattagacgtgtcctggtgtc 24613673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 35161159 - 35161126
Alignment:
Q  36 aaacctatgaagcacggacacttctcggattagg 69  Q
    ||||||||||||||||||||||| ||||||||||    
T  35161159 aaacctatgaagcacggacacttttcggattagg 35161126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 715545 - 715581
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtcc 715581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 752871 - 752907
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtcc 752907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 6485614 - 6485646
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  6485614 caccgacacttgtaattacactaaattatgtga 6485646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 8423658 - 8423702
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||| ||||||||||||||| |||||||| ||||| |||||||    
T  8423658 ctatgacgcacggacacttctccgattaggcgtgtcccggtgtcg 8423702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 12797341 - 12797373
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  12797341 caccgacacttgtaattacactgaattatgtga 12797373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 29205500 - 29205468
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  29205500 caccgacacttgtaattacactgaattatgtga 29205468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 40784073 - 40784029
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||||| |||||||||||  ||||| ||||||    
T  40784073 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 21880271 - 21880227
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcg 21880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 598327 - 598278
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 5409768 - 5409820
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  5409768 aacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 5409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 1433578 - 1433528
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 90  Q
    |||||||||||||||||| |||||||||| | ||||||||||||| |||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacaca 1433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 29763129 - 29763178
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacac 29763178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 35862072 - 35862027
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||    
T  35862072 acctatgaagcacggacactcctcggattaggcgtgtcctcgtgtc 35862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 9778627 - 9778575
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||||||| ||||    
T  9778627 aacctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacac 9778575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 18215144 - 18215221
Alignment:
Q  47 gcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||| ||| |||||||| ||||| |||||||   ||||| ||||||||||||||| ||||||  |||||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcg--gacacgacaccgacacttgtaactacactgcattatgtga 18215221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 29812598 - 29812634
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29812598 ctatgaagcacggacacttctcggattaggcgtgtcc 29812634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 2334312 - 2334274
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  2334312 acacgacaccgacacttgtaattacactaaattatgtga 2334274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 18039061 - 18039023
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  18039061 acacgacaccgacacttgtaattacactgaattatgtga 18039023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 24339704 - 24339666
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  24339704 acacgacaccgacacttgtaattacactgaattatgtga 24339666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 6490835 - 6490786
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||| ||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 30813916 - 30813867
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| |||||||||||| ||| ||| ||||| ||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacac 30813867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 35750007 - 35749922
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgt 124  Q
    |||||||||||| |||||| ||| || ||||  ||||| ||| ||| ||||||| |||||||||||  ||||||||| ||| ||||    
T  35750007 cctatgaagcacagacactcctccgactaggtgtgtcccggtttcggacacacgacaccgacacttacaattacactgaataatgt 35749922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 43027404 - 43027453
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||| ||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacac 43027453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 9408337 - 9408369
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  9408337 caccgacacttgtaattacactaaattatgtga 9408369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 21560559 - 21560527
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  21560559 caccgacacttgtaattacactgaattatgtga 21560527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 24339772 - 24339728
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||||||| |||| |||||||||||| ||||| |||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcg 24339728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 27945103 - 27945067
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgt 124  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  27945103 acacgacaccgacacttgtaattacactgaattatgt 27945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 32287404 - 32287452
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||| ||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 32287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 40287306 - 40287346
Alignment:
Q  44 gaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||| |||||||||||| ||||| |||||||    
T  40287306 gaagcacggacactcctcggattaggcatgtcccggtgtcg 40287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 43250118 - 43250074
Alignment:
Q  45 aagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 43250074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 23058389 - 23058477
Alignment:
Q  45 aagcacggacacttctcggattaggcttgtcctggtgtcgaac-------acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||       ||||| ||||||||||||||||||||||  |||||||||    
T  23058389 aagcacggacacttctcggattaggcgtgtcccggtgtcggacaacaccgacacgacaccgacacttgtaattacactggattatgtga 23058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 37419876 - 37419824
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  37419876 aacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 37419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 10535685 - 10535728
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtc 10535728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 2438661 - 2438703
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcg 2438703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 18841016 - 18841046
Alignment:
Q  94 caccgacacttgtaattacacttaattatgt 124  Q
    |||||||||||||||||||||||||||||||    
T  18841016 caccgacacttgtaattacacttaattatgt 18841046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 37497242 - 37497192
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaaca 88  Q
    ||||||||||||||||||||||| ||||||| | ||||| |||| ||||||    
T  37497242 acctatgaagcacggacacttctgggattagccatgtcccggtgccgaaca 37497192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 6940310 - 6940281
Alignment:
Q  95 accgacacttgtaattacacttaattatgt 124  Q
    ||||||||||||||||||||||||||||||    
T  6940310 accgacacttgtaattacacttaattatgt 6940281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 18420363 - 18420412
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||| ||||||||||||||||||| |||| |  ||||||||||    
T  18420363 ctatgaagcacagacacttctcggattaggcgtgtcataatgtcgaacac 18420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 26769641 - 26769592
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| |||||||||||| |||||  |||||| ||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 26769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 38117099 - 38117148
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| ||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacac 38117148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 2438722 - 2438754
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  2438722 caccgacacttgtaattacactgaattatgtga 2438754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 18422019 - 18421987
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  18422019 caccgacacttgtaattacactgaattatgtga 18421987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 18840953 - 18840997
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||||| |||||||||||  ||||| |||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcg 18840997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 19536400 - 19536432
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  19536400 caccgacacttgtaattacactgaattatgtga 19536432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 21616868 - 21616836
Alignment:
Q  36 aaacctatgaagcacggacacttctcggattag 68  Q
    ||||||||||||||||||||||||| |||||||    
T  21616868 aaacctatgaagcacggacacttcttggattag 21616836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 241724 - 241675
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 241675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 43565002 - 43564905
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca---------cggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||| |||||         || ||||||||||| |||||||||| ||||||||||    
T  43565002 acctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtga 43564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 7218216 - 7218247
Alignment:
Q  38 acctatgaagcacggacacttctcggattagg 69  Q
    ||||||||||||||||||||||||||||||||    
T  7218216 acctatgaagcacggacacttctcggattagg 7218247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 14873642 - 14873599
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgt 82  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||    
T  14873642 cctatgaagcacggacactcctcggattaggcgtgtcccggtgt 14873599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 2437030 - 2436981
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||| ||||| |||||||||||| |||| |||||||| ||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacac 2436981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 10298670 - 10298633
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  10298670 cctatgaagcacggacactcctcggattaggcgtgtcc 10298633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 21190998 - 21191091
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca---------cggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||| |||||||||||| ||||| || |||| ||||          || |||||||||||||||||||||| ||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtga 21191091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 6247678 - 6247646
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  6247678 caccgacacttgtaattacactgaattatgtga 6247646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 6247732 - 6247700
Alignment:
Q  37 aacctatgaagcacggacacttctcggattagg 69  Q
    |||||||||||||| ||||||||||||||||||    
T  6247732 aacctatgaagcacagacacttctcggattagg 6247700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 6326252 - 6326296
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    |||||||||||||||||||||||| ||||||| ||| | ||||||    
T  6326252 cctatgaagcacggacacttctcgaattaggcgtgttccggtgtc 6326296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 15884044 - 15884012
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  15884044 caccgacacttgtaattacactgaattatgtga 15884012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 17123166 - 17123130
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcc 17123130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 19820328 - 19820372
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||||| ||| |||||||| ||||| |||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcg 19820372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 21351908 - 21351940
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  21351908 caccgacacttgtaattacactgaattatgtga 21351940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 21542092 - 21542056
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgt 124  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  21542092 acacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 21576685 - 21576721
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcc 21576721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 22423764 - 22423800
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtcc 22423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 33178081 - 33178049
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  33178081 caccgacacttgtaattacactaaattatgtga 33178049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 35017162 - 35017126
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtcc 35017126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 39698671 - 39698627
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 39698627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 41995581 - 41995495
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac----acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||| || ||||||||| |||||| |||||  ||||    ||||||||||||||  |||||||| | ||||||||||    
T  41995581 atgaagcacggacactcctaggattaggcgtgtcctcgtgtccgacaccgatacggcaccgacact--taattacattgaattatgtga 41995495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 43001922 - 43001882
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgt 82  Q
    |||||||||||||||| |||||||||||| ||||| |||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtccaggtgt 43001882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 25211648 - 25211571
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaa 118  Q
    ||||||||||  ||||||||| |||||||| |||||||||||||   ||||| ||||||||| | |||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgtcggggacacgacaccgacacatataattacacttaa 25211571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 25775624 - 25775533
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac-------acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| ||||        || |||||||||||||||||||||| ||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacacgacgtgtccgacaccgacacttgtaattacactgaattatgtga 25775533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 41961577 - 41961628
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||| ||||    
T  41961577 acctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacac 41961628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 1389956 - 1389906
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacac 91  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcctggtgtcggacacac 1389906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 27505308 - 27505270
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  27505308 acacgacaccgacacttgtaattacacttaattatgtga 27505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 34185052 - 34185102
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 90  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| |||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacaca 34185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 49651714 - 49651760
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||    
T  49651714 acctatgaagcacggacacttctcggattaggtgtgtcccggtgtcg 49651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 4990912 - 4991000
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtc-ga-ac--acacggcaccgacacttgtaattacacttaattatgt 124  Q
    |||||||||||||||||| |||||||||||| |||||  ||||| || ||  ||||| | |||||||||||||||||||| ||||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgtccacgtgtctgataccaacacgacgccgacacttgtaattacactgaattatgt 4991000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 27505370 - 27505321
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacac 27505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 8587024 - 8587056
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||||||||||||||    
T  8587024 caccgacacttgtaattacacttaattatgtga 8587056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 40052434 - 40052382
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||| ||||| |||||||||||| ||||| ||||||| ||||    
T  40052434 aacctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 1509643 - 1509563
Alignment:
Q  50 cggacacttctcggattaggcttgtcctggtgtcgaacac----acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||| ||| |||||||| ||| | ||||||| ||||    ||| |||||||||||||||||||||| ||||||||||    
T  1509643 cggacactcctccgattaggcgtgtaccggtgtcggacaccgaaacgacaccgacacttgtaattacactaaattatgtga 1509563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 20503584 - 20503541
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtc 20503541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 24204983 - 24205030
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 24205030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 27903758 - 27903727
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggc 70  Q
    ||||||||||||||||||||||||||||||||    
T  27903758 cctatgaagcacggacacttctcggattaggc 27903727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 55401194 - 55401099
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac---------acggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||| |||||||||||| ||||  ||||||| ||||          || |||||||||||||||||||||| ||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtga 55401099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 14979271 - 14979225
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  14979271 aacctatgaagcacggacactcctcgggttaggcgtgtcccggtgtc 14979225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 40993273 - 40993319
Alignment:
Q  38 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 84  Q
    |||||||||||| ||||||| |||||||||||| ||||| |||||||    
T  40993273 acctatgaagcatggacactcctcggattaggcgtgtcccggtgtcg 40993319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 17276846 - 17276817
Alignment:
Q  40 ctatgaagcacggacacttctcggattagg 69  Q
    ||||||||||||||||||||||||||||||    
T  17276846 ctatgaagcacggacacttctcggattagg 17276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 26508167 - 26508134
Alignment:
Q  93 gcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||||||||| ||||||||||    
T  26508167 gcaccgacacttgtaattacactgaattatgtga 26508134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 28918062 - 28918025
Alignment:
Q  89 cacggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  28918062 cacgacaccgacacttgtaattacactgaattatgtga 28918025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 14209246 - 14209214
Alignment:
Q  37 aacctatgaagcacggacacttctcggattagg 69  Q
    |||||||||||||||||||||||| ||||||||    
T  14209246 aacctatgaagcacggacacttcttggattagg 14209214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 14217021 - 14216993
Alignment:
Q  41 tatgaagcacggacacttctcggattagg 69  Q
    |||||||||||||||||||||||||||||    
T  14217021 tatgaagcacggacacttctcggattagg 14216993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 14223150 - 14223122
Alignment:
Q  41 tatgaagcacggacacttctcggattagg 69  Q
    |||||||||||||||||||||||||||||    
T  14223150 tatgaagcacggacacttctcggattagg 14223122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 225199 - 225246
Alignment:
Q  42 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacac 225246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 188512 - 188446
Alignment:
Q  47 gcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacact 115  Q
    ||||||||||| |||||||||||| |||||||||||||   | ||| ||||||||||||| ||||||||    
T  188512 gcacggacactcctcggattaggcgtgtcctggtgtcg--gatacgacaccgacacttgttattacact 188446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 23834 - 23794
Alignment:
Q  86 acacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  23834 acacacgacaccgacacttgtaattacactgaattatgtga 23794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 135263 - 135347
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||| ||||  ||| |||||||| |||||||||||||   ||||| ||||||||| | |||||||||  ||||||||||    
T  135263 ctatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcg--gacacgacaccgacacatataattacacagaattatgtga 135347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 21152 - 21114
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtc 75  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  21152 aacctatgaagcacggatacttctcggattaggcgtgtc 21114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 21410 - 21372
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtc 75  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  21410 aacctatgaagcacagacacttctcggattaggcgtgtc 21372  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 53242 - 53204
Alignment:
Q  88 acacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  53242 acacggcaccgacacttataattacactgaattatgtga 53204  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 92940 - 92898
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtc 83  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtccaggtgtc 92898  T

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Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 123684 - 123652
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  123684 caccgacacttgtaattacactgaattatgtga 123652  T

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Target: scaffold0475 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 3428 - 3391
Alignment:
Q  39 cctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtgtcc 3391  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 3058 - 3009
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||| |||||||||||| |||||||||||| ||| | ||||||||||||    
T  3058 ctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacac 3009  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 130539 - 130506
Alignment:
Q  93 gcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||||||||||||||||||| ||||||||||    
T  130539 gcaccgacacttgtaattacactgaattatgtga 130506  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 4821 - 4857
Alignment:
Q  40 ctatgaagcacggacacttctcggattaggcttgtcc 76  Q
    |||||||||||||||||| |||||||||||| |||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtcc 4857  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 403 - 451
Alignment:
Q  41 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||| ||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 451  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 25763 - 25803
Alignment:
Q  86 acacacggcaccgacacttgtaattacacttaattatgtga 126  Q
    ||||||| ||||||||||| |||||||||| ||||||||||    
T  25763 acacacgacaccgacacttataattacactaaattatgtga 25803  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 71858 - 71806
Alignment:
Q  37 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 89  Q
    |||||||||||||| |||||| |||||||||| | ||||| ||||||| ||||    
T  71858 aacctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacac 71806  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 17752 - 17784
Alignment:
Q  94 caccgacacttgtaattacacttaattatgtga 126  Q
    |||||||||||||||||||||| ||||||||||    
T  17752 caccgacacttgtaattacactaaattatgtga 17784  T

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