View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_high_3 (Length: 546)
Name: NF6844_high_3
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Complemental strand, 55028704 - 55028184
Alignment:
| Q |
13 |
acatcaaaacttgaacttgaactagcattgaataacgagaaaataaagctcaccgacaagccacagccacaaatactaagcacagcaagactcgtccaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028704 |
acatcaaaacttgaacttgaactagcattgaataacgagaaaataaagctcaccgacaagccacagccacaaatactaagcacagcaagactcgtccaat |
55028605 |
T |
|
| Q |
113 |
gatgaccaccaccactaccgggaactccagcatcaacaacttccggcgccgttgaaaccaaatcagaacgcaacaatcgtgtcaaaacaccagtgccatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028604 |
gatgaccaccaccactaccgggaactccagcatcaacaacttccggcgccgttgaaaccaaatcagaacgcaacaatcgtgtcaaaacaccagtgccatc |
55028505 |
T |
|
| Q |
213 |
agtctgttgaccagaattaacagccttagccatggtaatagctctaagcggatctcttctcttaacaaccttcataaccaaatccaccgcatcttcatcc |
312 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028504 |
agtctgtgacccagaataaacagccttagccatggtaatagctctaagcggatctcttctcttaacaaccttcataaccaaatccaccgcatcttcatcc |
55028405 |
T |
|
| Q |
313 |
tcttcacgagccgtcagctcaattacaacagtatcctgcggcatcggtaacgccaccatgagttgcgattgaagcttaagagcaacctgatcttcatcct |
412 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028404 |
tcttcacgaggcgtcagctcaattacaacagtatcctgcggcatcggtaacgccaccatgagttgcgattgaagcttaagagcaacctgatcttcatcct |
55028305 |
T |
|
| Q |
413 |
ccgatgatgaccaatccaactcgatgcgaaaaccgaggtcctgatcttgagatacaattgaagaagctgaagaggatgaggatgaagatgaggctgatga |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55028304 |
ccgatgatgaccaatccaactcgatgcgaaaaccgaggtcctgatcttgagatacaattgaggaagctgaagaggatgaggatgaagatgaggctgatga |
55028205 |
T |
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| Q |
513 |
agaacgggaagaggttgatgt |
533 |
Q |
| |
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||||||||||||||||||||| |
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| T |
55028204 |
agaacgggaagaggttgatgt |
55028184 |
T |
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