View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_high_4 (Length: 425)
Name: NF6844_high_4
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 37894209 - 37893804
Alignment:
| Q |
1 |
acaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnnntgaattaattacattcttaacatagagaccaaacagcaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37894209 |
acaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgaaaaaaatgaattaattacattcttaacatagagaccaaacagcaag |
37894110 |
T |
|
| Q |
101 |
accaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894109 |
accaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttg |
37894010 |
T |
|
| Q |
201 |
aaaccatttccatagtcaatgacnnnnnnncagcaacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894009 |
aaaccatttccatagtcaatgactttttttcagcaacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttt |
37893910 |
T |
|
| Q |
301 |
tcccttcctttgagacacttcttcaatttctttctttggttcttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggtttctga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893909 |
tcccttcctttgagacacttcttcaatttctttctttggttcttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggtttctga |
37893810 |
T |
|
| Q |
401 |
ggaatt |
406 |
Q |
| |
|
|||||| |
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|
| T |
37893809 |
ggaatt |
37893804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 37189309 - 37188902
Alignment:
| Q |
1 |
acaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnnn----tgaattaattacattcttaacatagagaccaaacag |
96 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37189309 |
acaattgagttgaaattaatcaa-ttacaactcttggtttttgtgtcctcctcaagaaaaaaaatgaattaattacattcttaacatagagaccaaacag |
37189211 |
T |
|
| Q |
97 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189210 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgt |
37189111 |
T |
|
| Q |
197 |
cttgaaaccatttccatagtcaatgacnnnnnnncagcaacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttac |
296 |
Q |
| |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189110 |
cttgaaaccatttccatagtcaatgac-ttttttcgtatacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttac |
37189012 |
T |
|
| Q |
297 |
cttttcccttcctttgagacacttcttcaatttctttctttggttcttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggttt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189011 |
cttttcccttcctttgagacacttcttcaatttctttgtttggttcttgatgtactacttgttttttctgatcagaaacttgaggagcagtgtttggttt |
37188912 |
T |
|
| Q |
397 |
ctgaggaatt |
406 |
Q |
| |
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|||||||||| |
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|
| T |
37188911 |
ctgaggaatt |
37188902 |
T |
|
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