View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_high_5 (Length: 414)
Name: NF6844_high_5
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_high_5 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 6087 - 5697
Alignment:
| Q |
20 |
aaaagaactagaggatttgaaagattttgtcctaaatggtgaagataaaggagacaacaataagagcacatttgatcctgagaaacacattgatacatat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
6087 |
aaaagaactagaggatttgaaagattttgtcctaaatggtgaagataaaggagacaacaataagagcacatttgatcttgagaaacatattgatacatat |
5988 |
T |
|
| Q |
120 |
ttgcctgtaagagtaaaggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5987 |
ttgcctgtaagagtaaaggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaa |
5888 |
T |
|
| Q |
220 |
cttcagttttgtggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5887 |
cttcagttttgtggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtag |
5788 |
T |
|
| Q |
320 |
atggtacaagtaagtgaaagttactttgatttcaccattttaacaaaatagacatgaagcattgaaatagacacaaacaccaaactcgaca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
5787 |
atggtacaagtaagtgaaagttactttgatttcaccattttaacaaaatagacatgaagcattgaaatagacacaaacaccgaacacgaca |
5697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 6087 - 5697
Alignment:
| Q |
20 |
aaaagaactagaggatttgaaagattttgtcctaaatggtgaagataaaggagacaacaataagagcacatttgatcctgagaaacacattgatacatat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6087 |
aaaagaactagaggatttgaaagattttgtcctaaatggtgaagataaaggagacaacaataagagcacatttgatcttgagaaacacattgatacatat |
5988 |
T |
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| Q |
120 |
ttgcctgtaagagtaaaggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaa |
219 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5987 |
ttgcctgtaagagtataggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaa |
5888 |
T |
|
| Q |
220 |
cttcagttttgtggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5887 |
cttcagttttgtggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtag |
5788 |
T |
|
| Q |
320 |
atggtacaagtaagtgaaagttactttgatttcaccattttaacaaaatagacatgaagcattgaaatagacacaaacaccaaactcgaca |
410 |
Q |
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| T |
5787 |
atggtacaagtaagtgaaagttactttgatttcaccattttaacaaaatagacatgaagcattgaaatagacacaaacaccgaacacgaca |
5697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 49706539 - 49706439
Alignment:
| Q |
207 |
aaaatgataccaacttcagttttgtggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttg |
306 |
Q |
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|||| ||||||||| || ||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||| |
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| T |
49706539 |
aaaaggataccaacctcggttttatggggatattttgcttacatggcaatagatagtcttccggggaatcagttctgggaaaggatattgctcctctttg |
49706440 |
T |
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| Q |
307 |
t |
307 |
Q |
| |
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| T |
49706439 |
t |
49706439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 2235350 - 2235423
Alignment:
| Q |
231 |
tggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttt |
304 |
Q |
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|||||||| |||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
2235350 |
tggggatattttgcttatatggcaattgatagtctcccagggaaccaattttgggaaaggatattgcttctttt |
2235423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 12308781 - 12308833
Alignment:
| Q |
207 |
aaaatgataccaacttcagttttgtggggatactttgcttacatggctattga |
259 |
Q |
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|||||||| ||||| || || ||||||||||||||||||| |||||| ||||| |
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| T |
12308781 |
aaaatgattccaacgtctgtattgtggggatactttgctttcatggccattga |
12308833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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