View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_low_1 (Length: 919)
Name: NF6844_low_1
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 570 - 904
Target Start/End: Complemental strand, 1965401 - 1965069
Alignment:
| Q |
570 |
gcaatatgcaactgtcatgacaacttcattaatttaccgtttaaacaataatgtcacatataaactataatttgcaatcactaaaattctaaaaaacaag |
669 |
Q |
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| T |
1965401 |
gcaatatgcaaatgtcacggcaatgtcattaatttacggtattaacaataatgtcacgtataaactataatttgcaatcaataaaattctaaaaaacaag |
1965302 |
T |
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| Q |
670 |
tgaacgaaatactaccctcctccttctccttcgggcaatttgaagcttgatggcggggtgcatctcatcctgcattgtcctcgatagaccgtgtggtggt |
769 |
Q |
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| T |
1965301 |
tgaacataatactaccctcctccttctccttcgggcaatttgaagcttgatggcggggtgcatctcatcctgcattgtcctcggtagacc--gtggtggt |
1965204 |
T |
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| Q |
770 |
acttgtgtgattcgccatcatgcaaccactcctcaattatgcagtagacgttatgtatgacctggagtgtgttgggacggactttgccatggtcctttgc |
869 |
Q |
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| T |
1965203 |
acttgtgtgattcgccatcacgcaaccactcctccattatgcagtagacgttctgtatgacctggagtgtgttgggacggacttttccgtggtccttcgc |
1965104 |
T |
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| Q |
870 |
aatagttatctcctccttagacagcctagaaggtg |
904 |
Q |
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| T |
1965103 |
aatagttatctcctccttagatagcctagaaggtg |
1965069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 1966037 - 1965794
Alignment:
| Q |
12 |
gtttggtgttttgatcaattgcttttggagattacggcatttttcaatctttgtgggtagtgaaagaaatccgtgcgttttggaagatactgttttggat |
111 |
Q |
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| T |
1966037 |
gtttggcgttttgatcaattgcttttggagagtacgacatttttcaatctttgtgggtagtgaaagaaatgcgtgcgttttggaagatactgttttcgat |
1965938 |
T |
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| Q |
112 |
ggtttgcaatttgtgaaggtaataattgtctcttgaattcttatttggttttgattattcttattggctggttaacaaaccctagtcaactttggaatgc |
211 |
Q |
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| T |
1965937 |
ggtttgcaatttgtgaaggtaataattgtctcttgaattcttatttggttttgattattcttattggctggttaacaaaccctagtcaactttggaatgc |
1965838 |
T |
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| Q |
212 |
aaatagcgtgtttttattcaattattttggttgtctcatagttt |
255 |
Q |
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| T |
1965837 |
aaatagcgtgtttttattcaattgttttggttgtctcatagttt |
1965794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 253 - 462
Target Start/End: Complemental strand, 1965761 - 1965565
Alignment:
| Q |
253 |
tttattgaagttatgtaatgaaatttttt-gaaaggaaaagtatgtggaatcatgttggtggaacttccgttaagaccacagataaaatggatgaagcaa |
351 |
Q |
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| T |
1965761 |
tttattgaagttatgtaatgaaatttttttgaaaggaaaagtatgtggaa--------------cttccgttaagaccacagataaaatggatgaagcaa |
1965676 |
T |
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| Q |
352 |
taacttagtcaaggatagaaagagtcccaagagtcacaacggcagctgatttcaggtatgcagatagaacaacaactcttggtagaattgctgttttgta |
451 |
Q |
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| T |
1965675 |
taactcagtcaatgatagaaagagtcccaagagtcacaacggcagctgatttcaggtatgcagatagaacaacaactcttggtagaattgctgttttgta |
1965576 |
T |
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