View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_low_10 (Length: 406)
Name: NF6844_low_10
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 6917029 - 6916626
Alignment:
| Q |
1 |
tcaatgaactccaaattgttgaaaggacttggatatggccgcccttttggcctgaccggaacaatatacaagaagcctgccatgattatcacctcatcac |
100 |
Q |
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| T |
6917029 |
tcaatgaactccaaattgttgaaaggacttggatatggtcgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcac |
6916930 |
T |
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| Q |
101 |
agatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaa |
200 |
Q |
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| T |
6916929 |
a--tttacagtcagaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaa |
6916832 |
T |
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| Q |
201 |
tataagaaaacgcaaatatatgataaatttaatattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagct |
300 |
Q |
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| T |
6916831 |
tataagaaaacgcaaatatatgataaatttaatgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagct |
6916732 |
T |
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| Q |
301 |
actttttatttgctttcaaaattttgttgacccnnnnnnntgaaccaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgt |
400 |
Q |
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| T |
6916731 |
actttttatttgctttcaaaattttgttgacccaaaaaaatgaaccaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgt |
6916632 |
T |
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| Q |
401 |
acttga |
406 |
Q |
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| T |
6916631 |
acttga |
6916626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
66 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
154 |
Q |
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| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
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