View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_low_11 (Length: 378)
Name: NF6844_low_11
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 40843927 - 40844098
Alignment:
| Q |
1 |
catgaggtatataattgctaaccnnnnnnnnagtgatacaatagaagaaaagggaaatgcaaatcaaattttaagagcacaattgttgagaaaaatggac |
100 |
Q |
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| T |
40843927 |
catgaggtatataattgctaaccttttttttagtgatacaatagaagaaaagggaaatgcaaatcaaattttaagagcacaattg--------aatggac |
40844018 |
T |
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| Q |
101 |
agcgtctttttatggtgtttgtgattatttttggtggtgaattgagagtgagtaacaaagatataaatgtgcattgatgt |
180 |
Q |
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| T |
40844019 |
agcgtctttttatggtgtttgtgattatttttggtggtgaattgagagtgagtaacaaagatataaatgtgcattgatgt |
40844098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 40844229 - 40844295
Alignment:
| Q |
301 |
tcttgaacattaagcgttagcatttactttaattaaatgctaacttaattcattctgcaacaccaaa |
367 |
Q |
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| T |
40844229 |
tcttgcacattaagcgttagcatttactttagttaaatgctaacttaattcattctgcaataccaaa |
40844295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 40844170 - 40844202
Alignment:
| Q |
251 |
tttttacagaaacaagtcttgcacattattgat |
283 |
Q |
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| T |
40844170 |
tttttacagaaacaagtcttgcacattattgat |
40844202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 46501864 - 46501806
Alignment:
| Q |
37 |
tacaatagaagaaaagggaaatgcaaatcaaattttaagagcacaattgttgagaaaaa |
95 |
Q |
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| T |
46501864 |
tacaatagaagaaaagggaaataaatatcaaaatttgagagcacaattgttgataaaaa |
46501806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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