View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6844_low_14 (Length: 207)
Name: NF6844_low_14
Description: NF6844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6844_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 9334557 - 9334717
Alignment:
| Q |
32 |
tttacaagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaat |
131 |
Q |
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| T |
9334557 |
tttacgagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacactaggaggagaatataataaat |
9334656 |
T |
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| Q |
132 |
caaagagagttgttctttaggcactctttaattgtacaaaaaatgcaactattgttggttg |
192 |
Q |
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| T |
9334657 |
caaagagagttgttctttaggcactctttaattgtaccaaaaatgcaactattgttggttg |
9334717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 9941187 - 9941290
Alignment:
| Q |
25 |
cgtaacctttacaagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacattaggaggagaatat |
124 |
Q |
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| T |
9941187 |
cgtaacatttacaacttctgcttcccactcttttttctacag----aaagaaaga--gagagaattggatacattacaatttacattaggaggagaatat |
9941280 |
T |
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| Q |
125 |
aataaatcaa |
134 |
Q |
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| T |
9941281 |
aacaaatcaa |
9941290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 8207707 - 8207748
Alignment:
| Q |
94 |
tactttacaatttacattaggaggagaatataataaatcaaa |
135 |
Q |
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| T |
8207707 |
tactttacgatttacattaggaggaaaatataataaaccaaa |
8207748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 42362837 - 42362886
Alignment:
| Q |
86 |
gaattggatactttacaatttacattaggaggagaatataataaatcaaa |
135 |
Q |
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| T |
42362837 |
gaattggaaaatttacagtttatattaggaggagaatataataaatcaaa |
42362886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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